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| Locus name | AT1G13990 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others:Unknown |
| Effect for Senescence | Unclear |
| Gene Description | unknown protein |
| Evidence | Molecular evidence: SSH and Northern [Ref 1] |
| References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
| Sequence | AT1G13990.1 | Genomic | mRNA | CDS | Protein
AT1G13990.2 | Genomic | mRNA | CDS | Protein
AT1G13990.3 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT1G13990.1
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -27.2 kcal/mol
p-value: 0.005410
position: 289
target 5' G A A G 3'
AAGAAGAG GCGAGGA GUU
UUCUUCUC UGCUUCU UAG
miRNA 3' G A C U 5'
target: AT1G13990.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.5 kcal/mol
p-value: 0.043224
position: 291
target 5' A A G G 3'
GAAG GAGCGAGGAA UUGA
CUUU CUUGUUCUUU GACU
miRNA 3' A G A 5'
target: AT1G13990.2
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -27.2 kcal/mol
p-value: 0.005913
position: 289
target 5' G A A G 3'
AAGAAGAG GCGAGGA GUU
UUCUUCUC UGCUUCU UAG
miRNA 3' G A C U 5'
target: AT1G13990.2
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.5 kcal/mol
p-value: 0.047072
position: 291
target 5' A A G G 3'
GAAG GAGCGAGGAA UUGA
CUUU CUUGUUCUUU GACU
miRNA 3' A G A 5'
target: AT1G13990.3
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -27.2 kcal/mol
p-value: 0.005969
position: 289
target 5' G A A G 3'
AAGAAGAG GCGAGGA GUU
UUCUUCUC UGCUUCU UAG
miRNA 3' G A C U 5'
target: AT1G13990.3
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.5 kcal/mol
p-value: 0.047497
position: 291
target 5' A A G G 3'
GAAG GAGCGAGGAA UUGA
CUUU CUUGUUCUUU GACU
miRNA 3' A G A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_170243 | |
| Cross Link | |
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description | | Pfam | PF11360 | 1.7E-4 | 194 | 243 | IPR021503 | Protein of unknown function DUF3110 |
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