Basic information
Locus name	AT3G22600
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:lipid transfer
Effect for Senescence	unclear
Gene Description	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
Evidence	Molecular evidence: SSH and Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42 2: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process lipid transport molecular function lipid binding
Sequence	AT3G22600.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_150394	Accession Taxon NP_566126 Arabidopsis thaliana NP_566712 ( AT3G22600 ) Arabidopsis thaliana NP_001051534 Oryza sativa Japonica Group NP_001059009 Oryza sativa Japonica Group e_gw1.239.23.1 Physcomitrella patens subsp. patens gw1.2.439.1 Physcomitrella patens subsp. patens 29703.m001495 Ricinus communis 29703.m001498 Ricinus communis 29703.m001499 Ricinus communis 29844.m003260 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF14368 1.2E-17 14 105 IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain PRINTS PR00382 8.9E-6 27 43 IPR000528 Plant lipid transfer protein/Par allergen SUPERFAMILY SSF47699 5.4E-20 27 107 IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain SMART SM00499 2.1E-9 28 105 IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain PRINTS PR00382 8.9E-6 48 62 IPR000528 Plant lipid transfer protein/Par allergen PRINTS PR00382 8.9E-6 82 99 IPR000528 Plant lipid transfer protein/Par allergen