Basic information
Locus name	AT5G43760
Alias	KCS20
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	3-KETOACYL-COA SYNTHASE 20 (KCS20); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: response to light stimulus, response to cold, response to osmotic stress; LOCATED IN: membrane;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process fatty acid biosynthetic process lipid biosynthetic process cellular component membrane molecular function transferase activity, transferring acyl groups other than amino-acyl groups
Pathway	KEGG map00061 (EC 2.3.1.-) map00253 (EC 2.3.1.-) map00310 (EC 2.3.1.-) map00330 (EC 2.3.1.-) map00340 (EC 2.3.1.-) map00350 (EC 2.3.1.-) map00362 (EC 2.3.1.-) map00540 (EC 2.3.1.-) map00564 (EC 2.3.1.-) map00565 (EC 2.3.1.-) map00604 (EC 2.3.1.-) map00623 (EC 2.3.1.-) map00626 (EC 2.3.1.-) map00627 (EC 2.3.1.-) map00642 (EC 2.3.1.-) map00650 (EC 2.3.1.-) map00903 (EC 2.3.1.-) map00904 (EC 2.3.1.-) map00906 (EC 2.3.1.-) map00942 (EC 2.3.1.-) map00945 (EC 2.3.1.-) map00950 (EC 2.3.1.-) map00960 (EC 2.3.1.-) map00965 (EC 2.3.1.-)
Sequence	AT5G43760.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_130146	Accession Taxon NP_171620 Arabidopsis thaliana NP_171918 Arabidopsis thaliana NP_173376 Arabidopsis thaliana NP_173916 Arabidopsis thaliana NP_177020 Arabidopsis thaliana NP_179113 Arabidopsis thaliana NP_179223 Arabidopsis thaliana NP_180193 Arabidopsis thaliana NP_180232 Arabidopsis thaliana NP_195151 Arabidopsis thaliana NP_195177 Arabidopsis thaliana NP_195178 Arabidopsis thaliana NP_199189 ( AT5G43760 ) Arabidopsis thaliana NP_849861 Arabidopsis thaliana CMD118C Cyanidioschyzon merolae strain 10D 138664 Chlamydomonas reinhardtii NP_001046250 Oryza sativa Japonica Group NP_001049170 Oryza sativa Japonica Group NP_001049406 Oryza sativa Japonica Group NP_001049540 Oryza sativa Japonica Group NP_001056354 Oryza sativa Japonica Group NP_001056391 Oryza sativa Japonica Group NP_001057327 Oryza sativa Japonica Group NP_001057996 Oryza sativa Japonica Group NP_001064196 Oryza sativa Japonica Group NP_001068184 Oryza sativa Japonica Group e_gw1.118.47.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_300205 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_340162 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_350033 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_550141 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_280007 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_80014 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2450024 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_21000050 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_7000135 Physcomitrella patens subsp. patens 27524.m000296 Ricinus communis 27964.m000363 Ricinus communis 29739.m003649 Ricinus communis 29807.m000494 Ricinus communis 29844.m003186 Ricinus communis 29844.m003187 Ricinus communis 30170.m014048 Ricinus communis 30190.m010903 Ricinus communis estExt_fgenesh1_pg.C_chr_40597 Thalassiosira pseudonana CCMP1335 XP_002946066 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF036417 0.0 10 529 IPR012392 Very-long-chain 3-ketoacyl-CoA synthase PANTHER PTHR31561 0.0 11 526 No hit NA SUPERFAMILY SSF53901 6.0E-62 99 314 IPR016039 Thiolase-like Pfam PF08392 5.6E-142 103 396 IPR013601 FAE1/Type III polyketide synthase-like protein SUPERFAMILY SSF53901 6.3E-37 296 377 IPR016039 Thiolase-like SUPERFAMILY SSF53901 6.3E-37 406 497 IPR016039 Thiolase-like Pfam PF08541 1.2E-10 414 494 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787