Basic information
Locus name	AT3G42790
Alias	AL3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	ALFIN-LIKE 3 (AL3); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT3G42790.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G42790.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.2 kcal/mol  p-value: 0.000188  position: 715  target 5' A     A              C  3'             GAUGA GAUGAUGAGGAUGA                 CUGCU CUACUACUUCUACU      miRNA  3' A     A                 5'
Ortholog Group
Ortholog Groups: OG5_132765	Accession Taxon NP_172903 Arabidopsis thaliana NP_178351 Arabidopsis thaliana NP_187729 Arabidopsis thaliana NP_189865 ( AT3G42790 ) Arabidopsis thaliana NP_196180 Arabidopsis thaliana NP_197993 Arabidopsis thaliana NP_850775 Arabidopsis thaliana NP_974280 Arabidopsis thaliana 112975 Chlamydomonas reinhardtii 127913 Chlamydomonas reinhardtii ACO67116 Micromonas sp. RCC299 NP_001045036 Oryza sativa Japonica Group NP_001047157 Oryza sativa Japonica Group NP_001051707 Oryza sativa Japonica Group NP_001052897 Oryza sativa Japonica Group NP_001054733 Oryza sativa Japonica Group NP_001055570 Oryza sativa Japonica Group NP_001059241 Oryza sativa Japonica Group NP_001060242 Oryza sativa Japonica Group NP_001067599 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_14.00010030 Ostreococcus tauri e_gw1.262.19.1 Physcomitrella patens subsp. patens e_gw1.371.40.1 Physcomitrella patens subsp. patens e_gw1.38.126.1 Physcomitrella patens subsp. patens e_gw1.41.89.1 Physcomitrella patens subsp. patens e_gw1.53.141.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_970088 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_117000056 Physcomitrella patens subsp. patens 28162.m000123 Ricinus communis 29701.m000581 Ricinus communis 29739.m003593 Ricinus communis 29912.m005290 Ricinus communis 30063.m001414 Ricinus communis XP_002946566 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12321 4.1E-178 7 250 No hit NA Pfam PF12165 6.3E-82 11 145 IPR021998 Protein of unknown function DUF3594 SUPERFAMILY SSF57903 3.8E-17 186 247 IPR011011 Zinc finger, FYVE/PHD-type ProSiteProfiles PS50016 9.6 194 246 IPR019787 Zinc finger, PHD-finger SMART SM00249 8.0E-10 196 244 IPR001965 Zinc finger, PHD-type Pfam PF00628 1.8E-10 197 246 IPR019787 Zinc finger, PHD-finger ProSitePatterns PS01359 NA 197 243 IPR019786 Zinc finger, PHD-type, conserved site
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787