Basic information
Locus name	AT4G32980
Alias	ATH1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	ARABIDOPSIS THALIANA HOMEOBOX GENE 1 (ATH1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT2G35940.3); Has 4115 Blast hits to 4115 proteins in 263 species: Archae - 0; Bacteria - 0; Metazoa - 1822; Fungi - 169; Plants - 2023; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT4G32980.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_177987	Accession Taxon NP_195024 ( AT4G32980 ) Arabidopsis thaliana NP_001046346 Oryza sativa Japonica Group NP_001057875 Oryza sativa Japonica Group 29794.m003336 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00574 2.9E-64 196 334 IPR006563 POX Pfam PF07526 7.9E-30 201 333 IPR006563 POX PANTHER PTHR11850 3.3E-77 267 468 No hit NA ProSiteProfiles PS50071 11.1 370 433 IPR001356 Homeodomain SMART SM00389 3.0E-5 373 437 IPR001356 Homeodomain SUPERFAMILY SSF46689 2.7E-15 374 442 IPR009057 Homeodomain-like Pfam PF05920 9.9E-14 390 429 IPR008422 Homeobox KN domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787