Basic information
Locus name	AT4G15417
Alias	ATRTL1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ARABIDOPSIS THALIANA RNASEIII-LIKE 1 (ATRTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III (TAIR:AT3G20420.1); Has 3988 Blast hits to 3967 proteins in 1233 species: Archae - 17; Bacteria - 2247; Metazoa - 224; Fungi - 148; Plants - 112; Viruses - 12; Other Eukaryotes - 1228 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process RNA processing molecular function RNA binding ribonuclease III activity
Sequence	AT4G15417.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127728	Accession Taxon NP_680697 ( AT4G15417 ) Arabidopsis thaliana CMS219C Cyanidioschyzon merolae strain 10D ACO64843 Micromonas sp. RCC299 NP_001043306 Oryza sativa Japonica Group NP_001057601 Oryza sativa Japonica Group NP_001059701 Oryza sativa Japonica Group estExt_fgenesh2_pg.C_1490026 Physcomitrella patens subsp. patens 27988.m000029 Ricinus communis 29125.m000033 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR14950 4.6E-160 1 261 No hit NA SUPERFAMILY SSF69065 5.8E-36 27 190 IPR000999 Ribonuclease III domain ProSiteProfiles PS50142 30.7 29 171 IPR000999 Ribonuclease III domain SMART SM00535 1.7E-35 44 193 IPR000999 Ribonuclease III domain Pfam PF00636 9.3E-17 65 170 IPR000999 Ribonuclease III domain SUPERFAMILY SSF54768 1.4E-6 153 255 No hit NA