Basic information
Locus name	AT4G39910
Alias	ATUBP3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3 (ATUBP3); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease (TAIR:AT2G22310.1); Has 6852 Blast hits to 5696 proteins in 184 species: Archae - 0; Bacteria - 4; Metazoa - 3843; Fungi - 1073; Plants - 495; Viruses - 3; Other Eukaryotes - 1434 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process ubiquitin-dependent protein catabolic process molecular function ubiquitin thiolesterase activity
Sequence	AT4G39910.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128027	Accession Taxon NP_565532 Arabidopsis thaliana NP_568074 ( AT4G39910 ) Arabidopsis thaliana CMG042C Cyanidioschyzon merolae strain 10D 126990 Chlamydomonas reinhardtii ACO66194 Micromonas sp. RCC299 NP_001047202 Oryza sativa Japonica Group NP_001049228 Oryza sativa Japonica Group NP_001052951 Oryza sativa Japonica Group e_gw1.04.00.254.1 Ostreococcus tauri e_gw1.74.80.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_740099 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_50163 Physcomitrella patens subsp. patens 28281.m000381 Ricinus communis XP_002957652 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24006 2.1E-199 14 366 No hit NA Pfam PF00443 1.4E-73 21 364 IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 SUPERFAMILY SSF54001 2.4E-92 21 129 No hit NA ProSiteProfiles PS50235 30.2 23 368 IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 ProSitePatterns PS00972 NA 24 39 IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site SUPERFAMILY SSF54001 2.4E-92 170 365 No hit NA ProSitePatterns PS00973 NA 298 316 IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787