Basic information
Locus name	AT5G01830
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB17 (PLANT U-BOX 17); ubiquitin-protein ligase (TAIR:AT1G29340.1); Has 1693 Blast hits to 1583 proteins in 125 species: Archae - 0; Bacteria - 16; Metazoa - 163; Fungi - 73; Plants - 1229; Viruses - 3; Other Eukaryotes - 209 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein ubiquitination cellular component ubiquitin ligase complex molecular function protein binding ubiquitin-protein ligase activity
Sequence	AT5G01830.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_170475	Accession Taxon NP_195803 ( AT5G01830 ) Arabidopsis thaliana NP_001044663 Oryza sativa Japonica Group NP_001055837 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_chr_140084 Thalassiosira pseudonana CCMP1335 XP_002948272 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22849 4.0E-92 91 674 No hit NA Coils Coil NA 213 234 No hit NA SUPERFAMILY SSF57850 8.4E-28 265 346 No hit NA Pfam PF04564 2.4E-20 274 345 IPR003613 U box domain SMART SM00504 5.7E-33 277 340 IPR003613 U box domain SUPERFAMILY SSF48371 2.2E-21 385 639 IPR016024 Armadillo-type fold SMART SM00185 0.0 397 438 IPR000225 Armadillo Pfam PF00514 5.8E-6 402 437 IPR000225 Armadillo ProSiteProfiles PS50176 11.5 409 451 IPR000225 Armadillo SMART SM00185 370.0 483 523 IPR000225 Armadillo