Basic information
Locus name	AT5G54730
Alias	ATATG1BF
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	AtATG18f; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18g (TAIR:AT1G03380.1); Has 779 Blast hits to 776 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 402; Fungi - 213; Plants - 89; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT5G54730.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_132695	Accession Taxon NP_200284 ( AT5G54730 ) Arabidopsis thaliana NP_001044475 Oryza sativa Japonica Group 28166.m001060 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13268 9.4E-186 1 761 No hit NA SUPERFAMILY SSF50978 2.1E-19 61 252 IPR017986 WD40-repeat-containing domain SUPERFAMILY SSF50978 2.1E-19 327 435 IPR017986 WD40-repeat-containing domain SMART SM00320 0.0 336 376 IPR001680 WD40 repeat SMART SM00320 2.5 391 432 IPR001680 WD40 repeat Pfam PF12490 2.4E-70 441 686 IPR022175 Breast carcinoma amplified sequence 3