Basic information
Locus name	AT4G11360
Alias	RHA1B
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:RING-H2 finger protein
Effect for Senescence	Unclear
Gene Description	Encodes a putative RING-H2 finger protein RHA1b.
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT4G11360.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G11360.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -31.6 kcal/mol  p-value: 0.001307  position:  23  target 5' U  U               C  U 3'             UC CUCCUCUCUAUCUUU UC              AG GAGGAGGGAUAGGAG AG   miRNA  3' G                  U    5'  target: AT4G11360.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -31.6 kcal/mol  p-value: 0.002019  position:  23  target 5' U  U               C  U 3'             UC CUCCUCUCUAUCUUU UC              AG GAGGAGGGAUAGGAG AG   miRNA  3' G                  U    5'  target: AT4G11360.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -31.6 kcal/mol  p-value: 0.001378  position:  23  target 5' U  U               C  U 3'             UC CUCCUCUCUAUCUUU UC              AG GAGGAGGGAUAGGAG AG   miRNA  3' G                  U    5'  target: AT4G11360.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -31.6 kcal/mol  p-value: 0.001296  position:  23  target 5' U  U               C  U 3'             UC CUCCUCUCUAUCUUU UC              AG GAGGAGGGAUAGGAG AG   miRNA  3' G                  U    5'  target: AT4G11360.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -31.6 kcal/mol  p-value: 0.001990  position:  23  target 5' U  U               C  U 3'             UC CUCCUCUCUAUCUUU UC              AG GAGGAGGGAUAGGAG AG   miRNA  3' G                  U    5'
Ortholog Group
Ortholog Groups: OG5_212587	Accession Taxon NP_192875 ( AT4G11360 ) Arabidopsis thaliana NP_192876 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22764 5.4E-78 1 155 No hit NA SUPERFAMILY SSF57850 2.5E-19 69 136 No hit NA Pfam PF13639 2.4E-13 84 130 IPR001841 Zinc finger, RING-type ProSiteProfiles PS50089 13.1 85 129 IPR001841 Zinc finger, RING-type SMART SM00184 2.6E-6 85 128 IPR001841 Zinc finger, RING-type
Mutant Image
normal leaf senescence