Basic information
Locus name	AT3G54420
Alias	ATEP3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATEP3; FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43590.1); Has 1822 Blast hits to 1634 proteins in 370 species: Archae - 0; Bacteria - 351; Metazoa - 33; Fungi - 115; Plants - 1227; Viruses - 18; Other Eukaryotes - 78 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function chitin binding chitinase activity
Pathway	KEGG map00520 (EC 3.2.1.14)
Sequence	AT3G54420.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_140133	Accession Taxon NP_176061 Arabidopsis thaliana NP_181888 Arabidopsis thaliana NP_181889 Arabidopsis thaliana NP_181890 Arabidopsis thaliana NP_191010 ( AT3G54420 ) Arabidopsis thaliana NP_001048871 Oryza sativa Japonica Group NP_001053184 Oryza sativa Japonica Group NP_001053186 Oryza sativa Japonica Group 27753.m000016 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22595 9.5E-200 1 273 No hit NA PIRSF PIRSF001060 7.0E-154 5 273 IPR016283 Glycoside hydrolase, family 19 SUPERFAMILY SSF57016 3.3E-10 27 64 IPR001002 Chitin-binding, type 1 Pfam PF00187 1.4E-9 28 61 IPR001002 Chitin-binding, type 1 ProSiteProfiles PS50941 9.6 28 63 IPR001002 Chitin-binding, type 1 SMART SM00270 4.2E-9 30 61 IPR001002 Chitin-binding, type 1 PRINTS PR00451 2.0E-5 31 39 IPR001002 Chitin-binding, type 1 ProSitePatterns PS00026 NA 33 52 IPR018371 Chitin-binding, type 1, conserved site PRINTS PR00451 2.0E-5 39 46 IPR001002 Chitin-binding, type 1 PRINTS PR00451 2.0E-5 46 53 IPR001002 Chitin-binding, type 1 SUPERFAMILY SSF53955 2.4E-77 71 273 IPR023346 Lysozyme-like domain Pfam PF00182 8.2E-76 75 273 IPR000726 Glycoside hydrolase, family 19, catalytic ProSitePatterns PS00773 NA 92 114 IPR000726 Glycoside hydrolase, family 19, catalytic
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787