Basic information
Locus name	AT3G52800
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:DNA binding
Effect for Senescence	Unclear
Gene Description	zinc finger (AN1-like) family protein
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	molecular function DNA binding zinc ion binding
Sequence	AT3G52800.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G52800.1  miRNA: ath-miR161 miRNA: ath-miR161 mfe: -22.5 kcal/mol  p-value: 0.011967  position:  769  target 5' G      G             C 3'             AG C C UUCGAUGCGUUGA              UC G G AAGUUACGUAACU   miRNA  3' A  A U A               5'
Ortholog Group
Ortholog Groups: OG5_127624	Accession Taxon NP_001077694 Arabidopsis thaliana NP_172706 Arabidopsis thaliana NP_180326 Arabidopsis thaliana NP_190848 ( AT3G52800 ) Arabidopsis thaliana NP_192941 Arabidopsis thaliana NP_194013 Arabidopsis thaliana NP_564585 Arabidopsis thaliana NP_565844 Arabidopsis thaliana NP_849364 Arabidopsis thaliana NP_849652 Arabidopsis thaliana NP_974594 Arabidopsis thaliana CMT430C Cyanidioschyzon merolae strain 10D 195485 Chlamydomonas reinhardtii NP_001044076 Oryza sativa Japonica Group NP_001046186 Oryza sativa Japonica Group NP_001047019 Oryza sativa Japonica Group NP_001051527 Oryza sativa Japonica Group NP_001051528 Oryza sativa Japonica Group NP_001051530 Oryza sativa Japonica Group NP_001058066 Oryza sativa Japonica Group NP_001058985 Oryza sativa Japonica Group e_gw1.50.114.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2520009 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_230008 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1300111 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1380060 Physcomitrella patens subsp. patens gw1.23.189.1 Physcomitrella patens subsp. patens 29625.m000680 Ricinus communis 29820.m000982 Ricinus communis 30055.m001539 Ricinus communis 30147.m014170 Ricinus communis 30169.m006412 Ricinus communis estExt_fgenesh1_pg.C_chr_70212 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_1000779 Thalassiosira pseudonana CCMP1335 XP_002955258 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10634 6.1E-75 1 170 No hit NA ProSiteProfiles PS51036 9.5 10 44 IPR002653 Zinc finger, A20-type SMART SM00259 3.5E-5 13 37 IPR002653 Zinc finger, A20-type Pfam PF01754 5.0E-8 14 36 IPR002653 Zinc finger, A20-type SUPERFAMILY SSF57716 8.0E-12 15 62 No hit NA SUPERFAMILY SSF118310 2.0E-29 99 164 No hit NA ProSiteProfiles PS51039 12.7 108 151 IPR000058 Zinc finger, AN1-type Pfam PF01428 2.4E-12 111 150 IPR000058 Zinc finger, AN1-type SMART SM00154 2.4E-16 111 148 IPR000058 Zinc finger, AN1-type
Mutant Image
normal leaf senescence