Basic information
Locus name	AT4G11660
Alias	AT-HSFB2B
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	AT-HSFB2B; FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2A; DNA binding / transcription factor (TAIR:AT5G62020.1); Has 30258 Blast hits to 9599 proteins in 758 species: Archae - 35; Bacteria - 9372; Metazoa - 8618; Fungi - 1528; Plants - 6235; Viruses - 570; Other Eukaryotes - 3900 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT4G11660.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G11660.1  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -37.5 kcal/mol  p-value: 0.000295  position: 978  target 5' C   G                A  3'             UGC GCUGCUGCUGCUGCUA                 AUG UGGCGAUGACGAUGGU      miRNA  3' A   G                   5'
Ortholog Group
Ortholog Groups: OG5_163621	Accession Taxon NP_192903 ( AT4G11660 ) Arabidopsis thaliana NP_001062423 Oryza sativa Japonica Group NP_001063726 Oryza sativa Japonica Group e_gw1.85.139.1 Physcomitrella patens subsp. patens 30147.m014282 Ricinus communis 30190.m011156 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10015 9.9E-71 53 251 No hit NA SMART SM00415 1.6E-58 56 149 IPR000232 Heat shock factor (HSF)-type, DNA-binding SUPERFAMILY SSF46785 2.3E-34 57 149 No hit NA Pfam PF00447 7.5E-34 60 152 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 3.5E-20 60 83 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 3.5E-20 98 110 IPR000232 Heat shock factor (HSF)-type, DNA-binding ProSitePatterns PS00434 NA 99 123 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 3.5E-20 111 123 IPR000232 Heat shock factor (HSF)-type, DNA-binding Coils Coil NA 226 254 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787