Basic information
Locus name	AT3G24520
Alias	AT-HSFC1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	AT-HSFC1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA2; DNA binding / transcription factor (TAIR:AT2G26150.1); Has 1412 Blast hits to 1405 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 319; Fungi - 319; Plants - 457; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT3G24520.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_170537	Accession Taxon NP_189095 ( AT3G24520 ) Arabidopsis thaliana NP_001043623 Oryza sativa Japonica Group NP_001046370 Oryza sativa Japonica Group NP_001057843 Oryza sativa Japonica Group 29912.m005526 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10015 1.8E-84 10 212 No hit NA SMART SM00415 8.2E-55 14 107 IPR000232 Heat shock factor (HSF)-type, DNA-binding SUPERFAMILY SSF46785 2.7E-33 15 107 No hit NA Pfam PF00447 1.2E-32 18 110 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 2.2E-18 18 41 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 2.2E-18 56 68 IPR000232 Heat shock factor (HSF)-type, DNA-binding ProSitePatterns PS00434 NA 57 81 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 2.2E-18 69 81 IPR000232 Heat shock factor (HSF)-type, DNA-binding Coils Coil NA 120 155 No hit NA Pfam PF07334 9.1E-5 122 189 IPR009938 Interferon induced 35kDa, N-terminal Coils Coil NA 174 195 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787