Basic information
Locus name	AT4G17530
Alias	ATRAB1C
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATRAB1C; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB1A; GTP binding (TAIR:AT5G47200.1); Has 23593 Blast hits to 23542 proteins in 647 species: Archae - 17; Bacteria - 111; Metazoa - 13220; Fungi - 2827; Plants - 2160; Viruses - 19; Other Eukaryotes - 5239 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process small GTPase mediated signal transduction molecular function GTP binding
Pathway	Reactome REACT_11044
Sequence	AT4G17530.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127310	Accession Taxon NP_171715 Arabidopsis thaliana NP_187779 Arabidopsis thaliana NP_193486 ( AT4G17530 ) Arabidopsis thaliana NP_568678 Arabidopsis thaliana CMF181C Cyanidioschyzon merolae strain 10D 60490 Chlamydomonas reinhardtii ACO60747 Micromonas sp. RCC299 NP_001042202 Oryza sativa Japonica Group NP_001043336 Oryza sativa Japonica Group NP_001047606 Oryza sativa Japonica Group e_gw1.07.00.391.1 Ostreococcus tauri estExt_fgenesh2_pm.C_910037 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_950012 Physcomitrella patens subsp. patens 28193.m000298 Ricinus communis 29765.m000723 Ricinus communis 30146.m003429 Ricinus communis 30147.m014338 Ricinus communis estExt_fgenesh1_pg.C_chr_50571 Thalassiosira pseudonana CCMP1335 XP_002949370 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24073 5.0E-140 1 202 No hit NA ProSiteProfiles PS51419 30.3 4 200 No hit NA SUPERFAMILY SSF52540 9.4E-67 4 176 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00173 2.1E-35 6 172 IPR020849 Small GTPase superfamily, Ras type TIGRFAM TIGR00231 1.2E-35 7 164 IPR005225 Small GTP-binding protein domain PRINTS PR00449 1.2E-46 9 30 IPR001806 Small GTPase superfamily SMART SM00175 2.6E-107 9 172 IPR003579 Small GTPase superfamily, Rab type Pfam PF00071 7.3E-66 10 170 IPR001806 Small GTPase superfamily SMART SM00174 5.4E-16 11 171 IPR003578 Small GTPase superfamily, Rho type SMART SM00176 4.2E-5 14 199 IPR002041 Ran GTPase PRINTS PR00449 1.2E-46 32 48 IPR001806 Small GTPase superfamily PRINTS PR00449 1.2E-46 50 72 IPR001806 Small GTPase superfamily PRINTS PR00449 1.2E-46 112 125 IPR001806 Small GTPase superfamily PRINTS PR00449 1.2E-46 147 169 IPR001806 Small GTPase superfamily
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787