Basic information
Locus name	AT5G47960
Alias	ATRABA4C
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATRABA4C; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding (TAIR:AT3G12160.1); Has 22938 Blast hits to 22903 proteins in 635 species: Archae - 15; Bacteria - 93; Metazoa - 12701; Fungi - 2964; Plants - 2079; Viruses - 19; Other Eukaryotes - 5067 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process small GTPase mediated signal transduction molecular function GTP binding
Pathway	Reactome REACT_11044
Sequence	AT5G47960.1 | Genomic | mRNA | CDS | Protein
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00177 0.0 1 181 IPR024156 Small GTPase superfamily, ARF type PANTHER PTHR24073 1.1E-117 7 222 No hit NA ProSiteProfiles PS51419 28.1 11 220 No hit NA SUPERFAMILY SSF52540 3.0E-57 11 184 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00173 1.8E-22 13 179 IPR020849 Small GTPase superfamily, Ras type TIGRFAM TIGR00231 2.0E-36 15 169 IPR005225 Small GTP-binding protein domain PRINTS PR00449 2.5E-40 16 37 IPR001806 Small GTPase superfamily SMART SM00175 3.3E-103 16 179 IPR003579 Small GTPase superfamily, Rab type Pfam PF00071 7.7E-61 17 177 IPR001806 Small GTPase superfamily SMART SM00174 1.9E-10 18 175 IPR003578 Small GTPase superfamily, Rho type SMART SM00176 2.4E-5 21 215 IPR002041 Ran GTPase PRINTS PR00449 2.5E-40 39 55 IPR001806 Small GTPase superfamily PRINTS PR00449 2.5E-40 57 79 IPR001806 Small GTPase superfamily PRINTS PR00449 2.5E-40 119 132 IPR001806 Small GTPase superfamily PRINTS PR00449 2.5E-40 154 176 IPR001806 Small GTPase superfamily
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787