Basic information
Locus name	AT4G39220
Alias	ATRER1A
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATRER1A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1B (TAIR:AT2G21600.1); Has 366 Blast hits to 364 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 102; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component integral to membrane
Sequence	AT4G39220.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127650	Accession Taxon NP_179754 Arabidopsis thaliana NP_195633 ( AT4G39220 ) Arabidopsis thaliana NP_565550 Arabidopsis thaliana NP_850039 Arabidopsis thaliana CMI263C Cyanidioschyzon merolae strain 10D 190919 Chlamydomonas reinhardtii ACO66765 Micromonas sp. RCC299 NP_001041774 Oryza sativa Japonica Group NP_001058533 Oryza sativa Japonica Group NP_001061511 Oryza sativa Japonica Group e_gw1.14.00.296.1 Ostreococcus tauri estExt_Genewise1.C_330031 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1620023 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2540020 Physcomitrella patens subsp. patens 29634.m002115 Ricinus communis 29970.m000975 Ricinus communis 30170.m014222 Ricinus communis e_gw1.9.190.1 Thalassiosira pseudonana CCMP1335 XP_002955429 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10743 3.1E-117 1 191 IPR004932 Retrieval of early ER protein Rer1 PIRSF PIRSF016013 4.3E-146 1 191 IPR004932 Retrieval of early ER protein Rer1 Pfam PF03248 5.8E-74 15 181 IPR004932 Retrieval of early ER protein Rer1
Subcellular Localization
Localization	endoplasmic reticulum,golgi
Evidence	SUBAcon
Pubmed ID	23180787