Basic information   
Locus name AT5G43650
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene Descriptionbasic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor (TAIR:AT4G09820.1); Has 362 Blast hits to 362 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 7; Plants - 303; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
SequenceAT5G43650.1 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_190662
AccessionTaxon
NP_199178 ( AT5G43650 ) Arabidopsis thaliana
NP_001051221Oryza sativa Japonica Group
29844.m003167Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SUPERFAMILYSSF474592.4E-1179146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
ProSiteProfilesPS5088813.285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-788135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CoilsCoilNA124152No hitNA
Subcellular Localization   
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787