Basic information
Locus name	AT5G09730
Alias	BXL3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	BETA-XYLOSIDASE 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (TAIR:AT5G64570.1); Has 5156 Blast hits to 4586 proteins in 668 species: Archae - 16; Bacteria - 2504; Metazoa - 9; Fungi - 913; Plants - 288; Viruses - 0; Other Eukaryotes - 1426 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT5G09730.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G09730.1  miRNA: ath-miR2112-3p miRNA: ath-miR2112-3p mfe: -34.7 kcal/mol  p-value: 0.000240  position: 1445  target 5' U                    C  3'             UGCGUAGAUGCGGAUAUAGG                 ACGCGUUUACGCCUAUAUUU      miRNA  3'                      C  5'
Ortholog Group
Ortholog Groups: OG5_131698	Accession Taxon NP_177929 Arabidopsis thaliana NP_188596 Arabidopsis thaliana NP_196535 ( AT5G09730 ) Arabidopsis thaliana NP_196618 Arabidopsis thaliana NP_199747 Arabidopsis thaliana NP_201262 Arabidopsis thaliana NP_563659 Arabidopsis thaliana NP_001048140 Oryza sativa Japonica Group NP_001053392 Oryza sativa Japonica Group NP_001054038 Oryza sativa Japonica Group NP_001067709 Oryza sativa Japonica Group NP_001067725 Oryza sativa Japonica Group NP_001067726 Oryza sativa Japonica Group NP_001068441 Oryza sativa Japonica Group NP_001068511 Oryza sativa Japonica Group e_gw1.406.20.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1960027 Physcomitrella patens subsp. patens 28152.m000917 Ricinus communis 29693.m002045 Ricinus communis 29889.m003265 Ricinus communis 29908.m006002 Ricinus communis 30076.m004675 Ricinus communis 30221.m002222 Ricinus communis 31518.m000032 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR30620 8.7E-269 4 771 IPR026892 Glycoside hydrolase family 3 SUPERFAMILY SSF51445 4.0E-89 48 403 IPR017853 Glycoside hydrolase, superfamily Pfam PF00933 7.4E-64 77 358 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 2.4E-6 120 139 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 2.4E-6 210 226 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 2.4E-6 284 302 IPR001764 Glycoside hydrolase, family 3, N-terminal Pfam PF01915 8.5E-51 404 633 IPR002772 Glycoside hydrolase family 3 C-terminal domain SUPERFAMILY SSF52279 2.0E-45 404 635 IPR002772 Glycoside hydrolase family 3 C-terminal domain Pfam PF14310 2.9E-9 697 764 IPR026891 Fibronectin type III-like domain
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787