Basic information
Locus name	AT5G55530
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G50570.2); Has 506 Blast hits to 373 proteins in 95 species: Archae - 0; Bacteria - 131; Metazoa - 90; Fungi - 95; Plants - 72; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT5G55530.1 | Genomic | mRNA | CDS | Protein AT5G55530.2 | Genomic | mRNA | CDS | Protein AT5G55530.3 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G55530.1  miRNA: ath-miR781a miRNA: ath-miR781a mfe: -26.3 kcal/mol  p-value: 0.008508  position: 825  target 5' C   G          G     A  3'             AAG AUCCAGAAGG UCUGA                 UUC UAGGUCUUUU AGAUU      miRNA  3' A   A          G        5'  target: AT5G55530.1  miRNA: ath-miR781b miRNA: ath-miR781b mfe: -26.3 kcal/mol  p-value: 0.010536  position: 825  target 5' C   G          G     A  3'             AAG AUCCAGAAGG UCUGA                 UUC UAGGUCUUUU AGAUU      miRNA  3' A   A          G        5'  target: AT5G55530.2  miRNA: ath-miR781a miRNA: ath-miR781a mfe: -26.3 kcal/mol  p-value: 0.007913  position: 747  target 5' C   G          G     A  3'             AAG AUCCAGAAGG UCUGA                 UUC UAGGUCUUUU AGAUU      miRNA  3' A   A          G        5'  target: AT5G55530.2  miRNA: ath-miR781b miRNA: ath-miR781b mfe: -26.3 kcal/mol  p-value: 0.009927  position: 747  target 5' C   G          G     A  3'             AAG AUCCAGAAGG UCUGA                 UUC UAGGUCUUUU AGAUU      miRNA  3' A   A          G        5'  target: AT5G55530.3  miRNA: ath-miR781a miRNA: ath-miR781a mfe: -26.3 kcal/mol  p-value: 0.007702  position: 719  target 5' C   G          G     A  3'             AAG AUCCAGAAGG UCUGA                 UUC UAGGUCUUUU AGAUU      miRNA  3' A   A          G        5'  target: AT5G55530.3  miRNA: ath-miR781b miRNA: ath-miR781b mfe: -26.3 kcal/mol  p-value: 0.009709  position: 719  target 5' C   G          G     A  3'             AAG AUCCAGAAGG UCUGA                 UUC UAGGUCUUUU AGAUU      miRNA  3' A   A          G        5'
Ortholog Group
Ortholog Groups: OG5_170748	Accession Taxon NP_200364 Arabidopsis thaliana NP_974935 ( AT5G55530 ) Arabidopsis thaliana NP_974936 Arabidopsis thaliana NP_001049249 Oryza sativa Japonica Group 27613.m000633 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31208 9.7E-121 16 405 No hit NA SUPERFAMILY SSF49562 7.6E-18 46 182 IPR008973 C2 calcium/lipid-binding domain, CaLB SMART SM00239 1.3E-4 52 155 IPR000008 C2 calcium-dependent membrane targeting Pfam PF00168 1.5E-7 53 137 IPR000008 C2 calcium-dependent membrane targeting