Basic information
Locus name	AT5G44090
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B'' regulatory subunit, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G03960.1); Has 497 Blast hits to 496 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 279; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT5G44090.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127605	Accession Taxon NP_171892 Arabidopsis thaliana NP_175847 Arabidopsis thaliana NP_198242 Arabidopsis thaliana NP_199222 ( AT5G44090 ) Arabidopsis thaliana NP_568509 Arabidopsis thaliana NP_851089 Arabidopsis thaliana NP_973757 Arabidopsis thaliana CMO155C Cyanidioschyzon merolae strain 10D 112343 Chlamydomonas reinhardtii ACO61382 Micromonas sp. RCC299 NP_001046159 Oryza sativa Japonica Group NP_001064850 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_07.0001000041 Ostreococcus tauri e_gw1.34.310.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_680037 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_70019 Physcomitrella patens subsp. patens estExt_fgenesh2_pm.C_1470006 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1910054 Physcomitrella patens subsp. patens 28492.m000476 Ricinus communis 29680.m001700 Ricinus communis 29981.m000600 Ricinus communis thaps1_ua_kg.chr_13000106 Thalassiosira pseudonana CCMP1335 XP_002946173 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR14095 7.7E-283 7 538 No hit NA SUPERFAMILY SSF47473 9.0E-15 137 291 No hit NA ProSiteProfiles PS50222 6.0 185 212 IPR002048 EF-hand domain ProSiteProfiles PS50222 5.3 264 299 IPR002048 EF-hand domain SUPERFAMILY SSF47473 1.5E-25 307 463 No hit NA Pfam PF13499 4.3E-17 325 419 IPR011992 EF-hand-like domain ProSiteProfiles PS50222 11.4 390 425 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 403 415 IPR018247 EF-Hand 1, calcium-binding site
Subcellular Localization
Localization 1 Localization mitochondria Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787