Basic information
Locus name	AT5G44460
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT4G20780.1); Has 12279 Blast hits to 9033 proteins in 1085 species: Archae - 0; Bacteria - 43; Metazoa - 5206; Fungi - 2595; Plants - 2668; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT5G44460.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_164583	Accession Taxon NP_193810 Arabidopsis thaliana NP_199259 ( AT5G44460 ) Arabidopsis thaliana NP_001050012 Oryza sativa Japonica Group NP_001060653 Oryza sativa Japonica Group NP_001060983 Oryza sativa Japonica Group 27955.m000389 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10891 4.9E-93 12 177 No hit NA ProSiteProfiles PS50222 15.3 24 59 IPR002048 EF-hand domain Pfam PF13405 1.4E-8 28 57 IPR002048 EF-hand domain SMART SM00054 6.1E-6 28 56 IPR002048 EF-hand domain SUPERFAMILY SSF47473 5.3E-32 28 176 No hit NA ProSitePatterns PS00018 NA 37 49 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 16.3 107 142 IPR002048 EF-hand domain SMART SM00054 7.6E-6 111 139 IPR002048 EF-hand domain Pfam PF13499 5.5E-13 112 174 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 120 132 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 13.0 145 180 IPR002048 EF-hand domain SMART SM00054 5.4E-5 149 177 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 158 170 IPR018247 EF-Hand 1, calcium-binding site