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Locus name | AT2G23980 |
Alias | ATCNGC6 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Signal transduction | Effect for Senescence | Unclear | Gene Description | member of Cyclic nucleotide gated channel family | Evidence | Molecular evidence: SSH and Northern [Ref 1] | References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 | Gene Ontology | | Sequence | AT2G23980.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
| Details | | target: AT2G23980.1 miRNA: ath-miR399b miRNA: ath-miR399b mfe: -30.8 kcal/mol p-value: 0.005694
position: 1198 target 5' A A C U 3' AG GC ACUCUCCU UGGCA UC CG UGAGAGGA ACCGU miRNA 3' G C U A 5'
target: AT2G23980.1 miRNA: ath-miR399c miRNA: ath-miR399c mfe: -30.8 kcal/mol p-value: 0.007468
position: 1198 target 5' A A C U 3' AG GC ACUCUCCU UGGCA UC CG UGAGAGGA ACCGU miRNA 3' G C U A 5'
target: AT2G23980.1 miRNA: ath-miR776 miRNA: ath-miR776 mfe: -28.6 kcal/mol p-value: 0.002121
position: 2037 target 5' C G C 3' ACA CAAUGGAGGACUUGGG UGU GUUAUCUUCUGAAUCU miRNA 3' U A 5'
target: AT2G23980.1 miRNA: ath-miR867 miRNA: ath-miR867 mfe: -21.1 kcal/mol p-value: 0.095249
position: 1972 target 5' A G C G 3' UUC UGG AAGCCA GUUCAG AAG AUU UUUGGU CAAGUU miRNA 3' G A A 5'
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Ortholog Group | |
| Ortholog Groups: OG5_131975 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR10217 | 0.0 | 94 | 681 | No hit | NA | SUPERFAMILY | SSF81324 | 8.6E-34 | 106 | 304 | No hit | NA | Pfam | PF00520 | 2.3E-21 | 158 | 431 | IPR005821 | Ion transport domain | PRINTS | PR01463 | 1.1E-5 | 170 | 179 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | SUPERFAMILY | SSF81324 | 8.6E-34 | 376 | 436 | No hit | NA | PRINTS | PR01463 | 1.1E-5 | 383 | 400 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | PRINTS | PR01463 | 1.1E-5 | 409 | 420 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | PRINTS | PR01463 | 1.1E-5 | 427 | 436 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | SUPERFAMILY | SSF51206 | 2.2E-34 | 443 | 633 | IPR018490 | Cyclic nucleotide-binding-like | PRINTS | PR01463 | 1.1E-5 | 477 | 484 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | ProSiteProfiles | PS50042 | 13.1 | 514 | 598 | IPR000595 | Cyclic nucleotide-binding domain | SMART | SM00100 | 8.5E-13 | 514 | 645 | IPR000595 | Cyclic nucleotide-binding domain | Pfam | PF00027 | 1.2E-7 | 535 | 629 | IPR000595 | Cyclic nucleotide-binding domain | ProSiteProfiles | PS50096 | 8.0 | 650 | 679 | IPR000048 | IQ motif, EF-hand binding site | Coils | Coil | NA | 667 | 688 | No hit | NA |
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| Localization | plasma membrane | Evidence | SUBAcon | Pubmed ID | 23180787 |
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