Basic information
Locus name	AT3G22930
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM8 (CALMODULIN 8); calcium ion binding (TAIR:AT4G14640.1); Has 70712 Blast hits to 24982 proteins in 1601 species: Archae - 0; Bacteria - 1213; Metazoa - 27649; Fungi - 9879; Plants - 4664; Viruses - 162; Other Eukaryotes - 27145 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT3G22930.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_212426	Accession Taxon NP_188933 ( AT3G22930 ) Arabidopsis thaliana 29844.m003205 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Coils Coil NA 1 32 No hit NA SUPERFAMILY SSF47473 1.0E-53 20 170 No hit NA PANTHER PTHR23050 1.6E-89 27 170 No hit NA ProSiteProfiles PS50222 15.5 31 66 IPR002048 EF-hand domain SMART SM00054 4.0E-7 35 63 IPR002048 EF-hand domain Pfam PF13499 7.5E-14 37 96 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 44 56 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 13.4 67 102 IPR002048 EF-hand domain SMART SM00054 7.7E-7 71 99 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 80 92 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 16.8 104 139 IPR002048 EF-hand domain SMART SM00054 8.4E-8 108 136 IPR002048 EF-hand domain Pfam PF13499 2.6E-20 109 169 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 117 129 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 15.0 140 173 IPR002048 EF-hand domain SMART SM00054 3.5E-6 144 172 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 153 165 IPR018247 EF-Hand 1, calcium-binding site