Basic information
Locus name	AT3G13070
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated region (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 10211 Blast hits to 10209 proteins in 1421 species: Archae - 94; Bacteria - 6198; Metazoa - 215; Fungi - 98; Plants - 100; Viruses - 0; Other Eukaryotes - 3506 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT3G13070.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126632	Accession Taxon NP_001031633 Arabidopsis thaliana NP_171826 Arabidopsis thaliana NP_175166 Arabidopsis thaliana NP_175989 Arabidopsis thaliana NP_179058 Arabidopsis thaliana NP_187914 ( AT3G13070 ) Arabidopsis thaliana NP_193159 Arabidopsis thaliana NP_193160 Arabidopsis thaliana NP_195096 Arabidopsis thaliana NP_200091 Arabidopsis thaliana CMC089C Cyanidioschyzon merolae strain 10D CMI026C Cyanidioschyzon merolae strain 10D CMJ172C Cyanidioschyzon merolae strain 10D CMT109C Cyanidioschyzon merolae strain 10D 108792 Chlamydomonas reinhardtii 114099 Chlamydomonas reinhardtii ACO68915 Micromonas sp. RCC299 ACO70348 Micromonas sp. RCC299 NP_001048820 Oryza sativa Japonica Group NP_001050588 Oryza sativa Japonica Group NP_001055462 Oryza sativa Japonica Group e_gw1.11.00.75.1 Ostreococcus tauri fgenesh1_pm.C_Chr_05.0001000023 Ostreococcus tauri e_gw1.147.11.1 Physcomitrella patens subsp. patens e_gw1.15.356.1 Physcomitrella patens subsp. patens e_gw1.196.32.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_70121 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3550051 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_1219000001 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_7562000001 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_440000002 Physcomitrella patens subsp. patens 28153.m000279 Ricinus communis 29337.m000217 Ricinus communis 29726.m003904 Ricinus communis 29825.m000327 Ricinus communis 30099.m001641 Ricinus communis 30169.m006588 Ricinus communis 30169.m006589 Ricinus communis 30170.m014038 Ricinus communis 45974.m000013 Ricinus communis e_gw1.2.277.1 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_90028 Thalassiosira pseudonana CCMP1335 estExt_thaps1_ua_kg.C_chr_90117 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_6000612 Thalassiosira pseudonana CCMP1335 XP_002946789 Volvox carteri f. nagariensis XP_002949793 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22777 4.4E-144 134 619 No hit NA Pfam PF01595 1.1E-44 162 340 IPR002550 Domain of unknown function DUF21 SUPERFAMILY SSF54631 8.7E-33 342 481 No hit NA Pfam PF00571 6.3E-6 355 412 IPR000644 Cystathionine beta-synthase, core ProSiteProfiles PS51371 9.4 359 420 IPR000644 Cystathionine beta-synthase, core SMART SM00116 1.3 364 413 IPR000644 Cystathionine beta-synthase, core Pfam PF00571 8.4E-9 423 477 IPR000644 Cystathionine beta-synthase, core ProSiteProfiles PS51371 11.5 426 484 IPR000644 Cystathionine beta-synthase, core SMART SM00116 7.7 430 478 IPR000644 Cystathionine beta-synthase, core SUPERFAMILY SSF56176 1.2E-14 497 608 IPR016166 FAD-binding, type 2 SMART SM01091 6.6E-14 499 605 IPR005170 Transporter-associated domain Pfam PF03471 1.0E-22 500 604 IPR005170 Transporter-associated domain
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787