Basic information
Locus name	AT3G50360
Alias	ATCEND2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	CENTRIN2 (ATCEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: caltractin, putative / centrin, putative (TAIR:AT4G37010.2); Has 25773 Blast hits to 16030 proteins in 1342 species: Archae - 0; Bacteria - 125; Metazoa - 11739; Fungi - 5407; Plants - 4427; Viruses - 2; Other Eukaryotes - 4073 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT3G50360.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128884	Accession Taxon NP_190605 ( AT3G50360 ) Arabidopsis thaliana 159554 Chlamydomonas reinhardtii ACO62280 Micromonas sp. RCC299 NP_001060290 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_05.00010211 Ostreococcus tauri fgenesh1_pg.scaffold_160000045 Physcomitrella patens subsp. patens 30115.m001194 Ricinus communis e_gw1.7.446.1 Thalassiosira pseudonana CCMP1335 XP_002952644 Volvox carteri f. nagariensis XP_002956539 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10891 1.4E-104 3 167 No hit NA SUPERFAMILY SSF47473 8.6E-49 13 163 No hit NA ProSiteProfiles PS50222 16.9 23 58 IPR002048 EF-hand domain SMART SM00054 3.4E-8 27 55 IPR002048 EF-hand domain Pfam PF13499 1.2E-15 28 88 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 36 48 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 14.8 59 94 IPR002048 EF-hand domain SMART SM00054 4.0E-8 63 91 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 72 84 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 14.7 96 131 IPR002048 EF-hand domain SMART SM00054 1.9E-4 100 128 IPR002048 EF-hand domain Pfam PF13499 2.2E-14 101 161 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 109 121 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 13.1 132 167 IPR002048 EF-hand domain SMART SM00054 2.5E-5 136 164 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 145 157 IPR018247 EF-Hand 1, calcium-binding site
Subcellular Localization
Localization	cytosol,nucleus
Evidence	SUBAcon
Pubmed ID	23180787