Basic information
Locus name	AT5G05270
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); Has 288 Blast hits to 288 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function intramolecular lyase activity
Sequence	AT5G05270.1 | Genomic | mRNA | CDS | Protein AT5G05270.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_160410	Accession Taxon NP_568154 Arabidopsis thaliana NP_850770 ( AT5G05270 ) Arabidopsis thaliana NP_001065587 Oryza sativa Japonica Group NP_001065990 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_1590004 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1100007 Physcomitrella patens subsp. patens 29729.m002368 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF54626 6.9E-56 3 208 IPR016087 Chalcone isomerase Pfam PF02431 8.7E-50 13 206 IPR016087 Chalcone isomerase Coils Coil NA 105 126 No hit NA