Basic information
Locus name	AT5G33280
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	chloride channel-like (CLC) protein, putative; FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: intracellular, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-C (CHLORIDE CHANNEL C); anion channel/ voltage-gated chloride channel (TAIR:AT5G49890.1); Has 4315 Blast hits to 4052 proteins in 960 species: Archae - 71; Bacteria - 2408; Metazoa - 873; Fungi - 219; Plants - 177; Viruses - 0; Other Eukaryotes - 567 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process chloride transport transmembrane transport cellular component membrane molecular function voltage-gated chloride channel activity
Sequence	AT5G33280.1 | Genomic | mRNA | CDS | Protein
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11689 0.0 19 759 No hit NA PRINTS PR01120 1.2E-21 44 52 IPR002251 Chloride channel ClC-plant SUPERFAMILY SSF81340 1.7E-98 48 375 IPR014743 Chloride channel, core Pfam PF00654 3.2E-92 125 541 IPR001807 Chloride channel, voltage gated PRINTS PR00762 1.9E-58 139 156 IPR001807 Chloride channel, voltage gated PRINTS PR00762 1.9E-58 170 189 IPR001807 Chloride channel, voltage gated PRINTS PR00762 1.9E-58 234 253 IPR001807 Chloride channel, voltage gated PRINTS PR01120 1.2E-21 255 263 IPR002251 Chloride channel ClC-plant PRINTS PR01120 1.2E-21 269 279 IPR002251 Chloride channel ClC-plant PRINTS PR01120 1.2E-21 287 294 IPR002251 Chloride channel ClC-plant PRINTS PR01120 1.2E-21 411 427 IPR002251 Chloride channel ClC-plant SUPERFAMILY SSF81340 1.7E-98 416 562 IPR014743 Chloride channel, core PRINTS PR00762 1.9E-58 459 479 IPR001807 Chloride channel, voltage gated PRINTS PR00762 1.9E-58 491 507 IPR001807 Chloride channel, voltage gated PRINTS PR00762 1.9E-58 509 528 IPR001807 Chloride channel, voltage gated PRINTS PR00762 1.9E-58 547 561 IPR001807 Chloride channel, voltage gated SUPERFAMILY SSF54631 1.1E-23 562 738 No hit NA ProSiteProfiles PS51371 6.9 568 640 IPR000644 Cystathionine beta-synthase, core Pfam PF00571 3.4E-5 573 633 IPR000644 Cystathionine beta-synthase, core ProSiteProfiles PS51371 10.0 687 748 IPR000644 Cystathionine beta-synthase, core Pfam PF00571 0.0 692 737 IPR000644 Cystathionine beta-synthase, core
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787