Basic information
Locus name	AT5G45990
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 3943 Blast hits to 1642 proteins in 191 species: Archae - 15; Bacteria - 34; Metazoa - 1807; Fungi - 1089; Plants - 496; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process RNA processing mRNA processing cellular component intracellular molecular function protein binding
Sequence	AT5G45990.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128090	Accession Taxon NP_187927 Arabidopsis thaliana NP_198992 Arabidopsis thaliana NP_199411 ( AT5G45990 ) Arabidopsis thaliana NP_566944 Arabidopsis thaliana 116356 Chlamydomonas reinhardtii ACO63341 Micromonas sp. RCC299 NP_001055097 Oryza sativa Japonica Group NP_001064359 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_07.0001000055 Ostreococcus tauri estExt_fgenesh1_pg.C_50158 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_740015 Physcomitrella patens subsp. patens 30190.m010800 Ricinus communis estExt_gwp_gw1.C_chr_60409 Thalassiosira pseudonana CCMP1335 XP_002949625 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11246 0.0 5 671 No hit NA SMART SM00386 71.0 58 90 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 1.1E-22 68 179 No hit NA ProSiteProfiles PS50293 8.8 78 179 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00386 4.9E-5 92 124 IPR003107 RNA-processing protein, HAT helix SMART SM00386 0.0 126 158 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 5.5E-25 148 307 No hit NA SMART SM00386 6.2E-4 160 191 IPR003107 RNA-processing protein, HAT helix SMART SM00386 4.3E-6 193 224 IPR003107 RNA-processing protein, HAT helix Pfam PF02184 3.9E-13 194 222 IPR003107 RNA-processing protein, HAT helix SMART SM00386 0.0 227 262 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 1.1E-40 256 511 No hit NA SMART SM00386 0.2 264 298 IPR003107 RNA-processing protein, HAT helix SMART SM00386 270.0 308 340 IPR003107 RNA-processing protein, HAT helix SMART SM00386 3.4E-7 342 376 IPR003107 RNA-processing protein, HAT helix SMART SM00386 1.0E-4 386 422 IPR003107 RNA-processing protein, HAT helix SMART SM00386 14.0 424 455 IPR003107 RNA-processing protein, HAT helix ProSiteProfiles PS50293 6.8 443 510 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00386 4.1E-4 457 489 IPR003107 RNA-processing protein, HAT helix Pfam PF05843 1.2E-4 482 539 IPR008847 Suppressor of forked SMART SM00386 8.9E-5 491 525 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 3.4E-12 514 603 No hit NA SMART SM00386 0.0 527 558 IPR003107 RNA-processing protein, HAT helix
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787