Basic information
Locus name	AT4G34180
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	cyclase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative cyclase (InterPro:IPR007325); BEST Arabidopsis thaliana protein match is: cyclase family protein (TAIR:AT1G44542.1); Has 819 Blast hits to 819 proteins in 310 species: Archae - 59; Bacteria - 600; Metazoa - 35; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Pathway	KEGG map00380 (EC 3.5.1.9) map00630 (EC 3.5.1.9) MetaCyc PWY-5651
Sequence	AT4G34180.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130210	Accession Taxon NP_175091 Arabidopsis thaliana NP_567957 ( AT4G34180 ) Arabidopsis thaliana NP_567979 Arabidopsis thaliana ACO62041 Micromonas sp. RCC299 ACO70595 Micromonas sp. RCC299 NP_001046126 Oryza sativa Japonica Group NP_001058155 Oryza sativa Japonica Group NP_001061523 Oryza sativa Japonica Group NP_001062571 Oryza sativa Japonica Group e_gw1.98.78.1 Physcomitrella patens subsp. patens 29801.m003111 Ricinus communis 29801.m003112 Ricinus communis 29801.m003113 Ricinus communis 55479.m000035 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31118 5.4E-175 1 255 No hit NA SUPERFAMILY SSF102198 2.2E-50 38 254 No hit NA Pfam PF04199 5.3E-23 40 198 IPR007325 Putative cyclase
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787