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| Locus name | AT5G43060 |
| Organism | Arabidopsis thaliana | | Taxonomic identifier | [NCBI] | | Function category | Others | | Effect for Senescence | unclear | | Gene Description | cysteine proteinase, putative / thiol protease, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase (TAIR:AT1G47128.1); Has 7000 Blast hits to 6290 proteins in 593 species: Archae - 25; Bacteria - 79; Metazoa - 3655; Fungi - 4; Plants - 1235; Viruses - 122; Other Eukaryotes - 1880 (source: NCBI BLink). | | Evidence | Genomic evidence:microarray data [Ref 1] | | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | | Gene Ontology | | | Sequence | AT5G43060.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction  | |
| | Details | | target: AT5G43060.1
miRNA: ath-miR396a
miRNA: ath-miR396a
mfe: -34.1 kcal/mol
p-value: 0.000543
position: 508
target 5' A A G 3'
AG UCAAGGAAGCUGUGGGA
UC AGUUCUUUCGACACCUU
miRNA 3' G A 5'
target: AT5G43060.1
miRNA: ath-miR396b
miRNA: ath-miR396b
mfe: -34.3 kcal/mol
p-value: 0.000391
position: 507
target 5' A A G 3'
AAG UCAAGGAAGCUGUGGGA
UUC AGUUCUUUCGACACCUU
miRNA 3' A 5'
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| Ortholog Group | |
| | Ortholog Groups: OG5_126607 | |
| Cross Link | |
| | Database | Entry ID | E-value | Start | End | InterPro ID | Description | | PANTHER | PTHR12411 | 6.8E-252 | 9 | 463 | IPR013128 | Peptidase C1A, papain | | SUPERFAMILY | SSF54001 | 2.8E-113 | 43 | 353 | No hit | NA | | Pfam | PF08246 | 1.7E-16 | 50 | 110 | IPR013201 | Proteinase inhibitor I29, cathepsin propeptide | | SMART | SM00848 | 3.6E-20 | 50 | 110 | IPR013201 | Proteinase inhibitor I29, cathepsin propeptide | | Pfam | PF00112 | 1.1E-87 | 138 | 353 | IPR000668 | Peptidase C1A, papain C-terminal | | SMART | SM00645 | 1.5E-130 | 138 | 353 | IPR000668 | Peptidase C1A, papain C-terminal | | PRINTS | PR00705 | 1.1E-10 | 156 | 171 | IPR000668 | Peptidase C1A, papain C-terminal | | ProSitePatterns | PS00139 | NA | 156 | 167 | IPR000169 | Cysteine peptidase, cysteine active site | | ProSitePatterns | PS00639 | NA | 296 | 306 | IPR025660 | Cysteine peptidase, histidine active site | | PRINTS | PR00705 | 1.1E-10 | 298 | 308 | IPR000668 | Peptidase C1A, papain C-terminal | | PRINTS | PR00705 | 1.1E-10 | 313 | 319 | IPR000668 | Peptidase C1A, papain C-terminal | | ProSitePatterns | PS00640 | NA | 313 | 332 | IPR025661 | Cysteine peptidase, asparagine active site | | SUPERFAMILY | SSF57277 | 1.2E-11 | 373 | 407 | No hit | NA | | SMART | SM00277 | 1.4E-25 | 376 | 433 | IPR000118 | Granulin | | Pfam | PF00396 | 9.3E-12 | 387 | 434 | IPR000118 | Granulin |
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| | Localization | extracellular | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
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