Basic information
Locus name	AT3G16240
Alias	DELTA-TIP
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	DELTA-TIP; FUNCTIONS IN: ammonia transporter activity, water channel activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel (TAIR:AT4G17340.1); Has 6901 Blast hits to 6871 proteins in 1254 species: Archae - 61; Bacteria - 2645; Metazoa - 1299; Fungi - 265; Plants - 1456; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transport cellular component membrane molecular function transporter activity
Sequence	AT3G16240.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126615	Accession Taxon NP_173223 Arabidopsis thaliana NP_174472 Arabidopsis thaliana NP_177462 Arabidopsis thaliana NP_179277 Arabidopsis thaliana NP_180152 Arabidopsis thaliana NP_180986 Arabidopsis thaliana NP_188245 ( AT3G16240 ) Arabidopsis thaliana NP_192056 Arabidopsis thaliana NP_193626 Arabidopsis thaliana NP_198597 Arabidopsis thaliana NP_198598 Arabidopsis thaliana NP_566271 Arabidopsis thaliana NP_567572 Arabidopsis thaliana CMK067C Cyanidioschyzon merolae strain 10D 190851 Chlamydomonas reinhardtii NP_001042328 Oryza sativa Japonica Group NP_001042500 Oryza sativa Japonica Group NP_001042501 Oryza sativa Japonica Group NP_001045562 Oryza sativa Japonica Group NP_001046375 Oryza sativa Japonica Group NP_001054979 Oryza sativa Japonica Group NP_001057556 Oryza sativa Japonica Group NP_001064933 Oryza sativa Japonica Group e_gw1.13.341.1 Physcomitrella patens subsp. patens e_gw1.212.32.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1010163 Physcomitrella patens subsp. patens estExt_Genewise1.C_1840076 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2830008 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1560118 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_370175 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_910027 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_44000016 Physcomitrella patens subsp. patens gw1.76.43.1 Physcomitrella patens subsp. patens 28180.m000392 Ricinus communis 28827.m000171 Ricinus communis 29589.m001261 Ricinus communis 29669.m000808 Ricinus communis 29669.m000809 Ricinus communis 29681.m001366 Ricinus communis 29788.m000338 Ricinus communis 29794.m003419 Ricinus communis 29816.m000676 Ricinus communis 29844.m003330 Ricinus communis 29908.m006033 Ricinus communis 29969.m000266 Ricinus communis 30026.m001488 Ricinus communis 30146.m003542 Ricinus communis XP_002952875 Volvox carteri f. nagariensis XP_002956415 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR19139 4.3E-180 4 249 IPR000425 Major intrinsic protein Pfam PF00230 4.1E-76 14 232 IPR000425 Major intrinsic protein SUPERFAMILY SSF81338 1.7E-66 14 243 IPR023271 Aquaporin-like PRINTS PR00783 3.9E-56 19 38 IPR000425 Major intrinsic protein TIGRFAM TIGR00861 2.3E-53 23 232 IPR000425 Major intrinsic protein PRINTS PR00783 3.9E-56 63 87 IPR000425 Major intrinsic protein ProSitePatterns PS00221 NA 81 89 IPR022357 Major intrinsic protein, conserved site PRINTS PR00783 3.9E-56 100 119 IPR000425 Major intrinsic protein PRINTS PR00783 3.9E-56 145 163 IPR000425 Major intrinsic protein PRINTS PR00783 3.9E-56 178 200 IPR000425 Major intrinsic protein PRINTS PR00783 3.9E-56 215 235 IPR000425 Major intrinsic protein
Subcellular Localization
Localization 1 Localization vacuole Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787