Basic information
Locus name	AT3G48050
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	DNA binding / protein binding / transcription regulator; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Bromo adjacent region (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT3G48060.1); Has 5017 Blast hits to 3180 proteins in 326 species: Archae - 12; Bacteria - 1044; Metazoa - 2041; Fungi - 498; Plants - 263; Viruses - 23; Other Eukaryotes - 1136 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transcription, DNA-dependent cellular component nucleus molecular function DNA binding
Sequence	AT3G48050.1 | Genomic | mRNA | CDS | Protein AT3G48050.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G48050.1  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -35.5 kcal/mol  p-value: 0.002677  position: 3547  target 5' A                     A  3'             UUACUGUUGCUGCUGCUGCCA                 AAUGGUGGCGAUGACGAUGGU      miRNA  3'                          5'  target: AT3G48050.2  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -35.5 kcal/mol  p-value: 0.002630  position: 3547  target 5' A                     A  3'             UUACUGUUGCUGCUGCUGCCA                 AAUGGUGGCGAUGACGAUGGU      miRNA  3'                          5'
Ortholog Group
Ortholog Groups: OG5_153325	Accession Taxon NP_190388 Arabidopsis thaliana NP_190389 Arabidopsis thaliana NP_850669 ( AT3G48050 ) Arabidopsis thaliana NP_001048086 Oryza sativa Japonica Group NP_001048087 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_310110 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1360060 Physcomitrella patens subsp. patens 30147.m013991 Ricinus communis 30147.m013994 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR15141 0.0 2 968 No hit NA ProSiteProfiles PS51038 17.9 49 164 IPR001025 Bromo adjacent homology (BAH) domain SMART SM00439 3.8E-31 49 164 IPR001025 Bromo adjacent homology (BAH) domain Pfam PF01426 6.2E-10 50 159 IPR001025 Bromo adjacent homology (BAH) domain SUPERFAMILY SSF47676 2.4E-20 314 423 IPR017923 Transcription factor IIS, N-terminal ProSiteProfiles PS51319 21.8 326 412 IPR017923 Transcription factor IIS, N-terminal SMART SM00509 7.3E-30 332 411 IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type Pfam PF08711 3.7E-14 360 409 IPR017923 Transcription factor IIS, N-terminal