Basic information
Locus name	AT5G19490
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	DNA binding / sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor (TAIR:AT3G12480.1); Has 738 Blast hits to 738 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 279; Fungi - 192; Plants - 206; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component intracellular molecular function protein heterodimerization activity sequence-specific DNA binding
Sequence	AT5G19490.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129557	Accession Taxon NP_187854 Arabidopsis thaliana NP_197450 ( AT5G19490 ) Arabidopsis thaliana CMT396C Cyanidioschyzon merolae strain 10D 149251 Chlamydomonas reinhardtii ACO61874 Micromonas sp. RCC299 NP_001055923 Oryza sativa Japonica Group NP_001068055 Oryza sativa Japonica Group 0900010064 Ostreococcus tauri e_gw1.112.150.1 Physcomitrella patens subsp. patens e_gw1.35.352.1 Physcomitrella patens subsp. patens gw1.143.117.1 Physcomitrella patens subsp. patens 29686.m000870 Ricinus communis 29785.m000944 Ricinus communis fgenesh1_pg.C_chr_5000624 Thalassiosira pseudonana CCMP1335 XP_002949571 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10252 6.6E-46 1 105 No hit NA Pfam PF00808 1.2E-17 8 71 IPR003958 Transcription factor CBF/NF-Y/archaeal histone SUPERFAMILY SSF47113 4.9E-19 18 87 IPR009072 Histone-fold