Basic information
Locus name	AT4G00270
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT2G25650.1); Has 171 Blast hits to 167 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT4G00270.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G00270.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -29.8 kcal/mol  p-value: 0.001078  position: 781  target 5' G   A          U     G  3'             GAC AUGAUGAUGA GAUGA                 CUG UACUACUACU CUACU      miRNA  3' A   C          U        5'
Ortholog Group
Ortholog Groups: OG5_141661	Accession Taxon NP_181175 Arabidopsis thaliana NP_189224 Arabidopsis thaliana NP_189363 Arabidopsis thaliana NP_196932 Arabidopsis thaliana NP_565602 Arabidopsis thaliana NP_567163 ( AT4G00270 ) Arabidopsis thaliana NP_001055138 Oryza sativa Japonica Group e_gw1.142.55.1 Physcomitrella patens subsp. patens e_gw1.227.49.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_700006 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3760050 Physcomitrella patens subsp. patens 29929.m004733 Ricinus communis 30190.m010980 Ricinus communis estExt_fgenesh1_pg.C_chr_70639 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31766 1.3E-138 2 302 No hit NA Pfam PF04504 1.0E-33 64 159 IPR007592 Protein of unknown function DUF573 Coils Coil NA 182 210 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787