Basic information
Locus name	AT5G15700
Alias	PROT2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	DNA-directed RNA polymerase (RPOT2); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, mitochondrial (RPOMT) (TAIR:AT1G68990.1); Has 1079 Blast hits to 1064 proteins in 245 species: Archae - 0; Bacteria - 22; Metazoa - 122; Fungi - 163; Plants - 126; Viruses - 102; Other Eukaryotes - 544 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transcription, DNA-dependent molecular function DNA binding DNA-directed RNA polymerase activity
Pathway	KEGG map00230 (EC 2.7.7.6) map00240 (EC 2.7.7.6)
Sequence	AT5G15700.1 | Genomic | mRNA | CDS | Protein AT5G15700.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127975	Accession Taxon NP_177063 Arabidopsis thaliana NP_179989 Arabidopsis thaliana NP_197074 ( AT5G15700 ) Arabidopsis thaliana NP_973525 Arabidopsis thaliana CMJ257C Cyanidioschyzon merolae strain 10D 111616 Chlamydomonas reinhardtii ACO64961 Micromonas sp. RCC299 NP_001058231 Oryza sativa Japonica Group NP_001062659 Oryza sativa Japonica Group gw1.09.00.1.1 Ostreococcus tauri estExt_Genewise1.C_2410084 Physcomitrella patens subsp. patens estExt_Genewise1.C_2460083 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2560017 Physcomitrella patens subsp. patens 28202.m000132 Ricinus communis 30114.m000528 Ricinus communis 30138.m003886 Ricinus communis e_gw1.2.22.1 Thalassiosira pseudonana CCMP1335 XP_002947812 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10102 0.0 113 1011 IPR002092 DNA-directed RNA polymerase, phage-type SUPERFAMILY SSF56672 1.2E-280 169 1002 No hit NA Coils Coil NA 319 340 No hit NA Pfam PF00940 1.4E-148 620 1002 IPR002092 DNA-directed RNA polymerase, phage-type ProSitePatterns PS00900 NA 708 719 IPR002092 DNA-directed RNA polymerase, phage-type ProSitePatterns PS00489 NA 781 795 IPR002092 DNA-directed RNA polymerase, phage-type
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787