Basic information
Locus name	AT5G62500
Alias	ATEB1B
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	END BINDING PROTEIN 1B (ATEB1B); FUNCTIONS IN: microtubule binding; INVOLVED IN: thigmotropism, positive gravitropism, cytoskeleton organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: ATEB1A; microtubule binding (TAIR:AT3G47690.1); Has 823 Blast hits to 788 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 93; Plants - 58; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function microtubule binding protein binding
Sequence	AT5G62500.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127230	Accession Taxon NP_190353 Arabidopsis thaliana NP_201056 ( AT5G62500 ) Arabidopsis thaliana NP_201528 Arabidopsis thaliana CMJ156C Cyanidioschyzon merolae strain 10D 194209 Chlamydomonas reinhardtii ACO66580 Micromonas sp. RCC299 NP_001054046 Oryza sativa Japonica Group NP_001064972 Oryza sativa Japonica Group gw1.15.00.228.1 Ostreococcus tauri e_gw1.49.178.1 Physcomitrella patens subsp. patens e_gw1.49.179.1 Physcomitrella patens subsp. patens e_gw1.9.311.1 Physcomitrella patens subsp. patens gw1.9.319.1 Physcomitrella patens subsp. patens 29970.m000983 Ricinus communis 30147.m014109 Ricinus communis e_gw1.9.149.1 Thalassiosira pseudonana CCMP1335 XP_002956043 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10623 8.0E-112 1 292 IPR027328 Microtubule-associated protein RP/EB SUPERFAMILY SSF47576 5.0E-40 5 132 IPR001715 Calponin homology domain Pfam PF00307 3.1E-9 17 114 IPR001715 Calponin homology domain ProSiteProfiles PS51230 16.7 180 250 IPR004953 EB1, C-terminal SUPERFAMILY SSF140612 5.4E-20 187 247 IPR004953 EB1, C-terminal Coils Coil NA 188 209 No hit NA Pfam PF03271 3.1E-17 205 243 IPR004953 EB1, C-terminal Coils Coil NA 264 294 No hit NA
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787