Basic information
Locus name	AT5G54940
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT4G27130.1); Has 638 Blast hits to 635 proteins in 210 species: Archae - 21; Bacteria - 4; Metazoa - 295; Fungi - 105; Plants - 120; Viruses - 3; Other Eukaryotes - 90 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process translational initiation molecular function translation initiation factor activity
Sequence	AT5G54940.1 | Genomic | mRNA | CDS | Protein AT5G54940.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127384	Accession Taxon NP_001119436 Arabidopsis thaliana NP_175831 Arabidopsis thaliana NP_194443 Arabidopsis thaliana NP_200287 Arabidopsis thaliana NP_568818 ( AT5G54940 ) Arabidopsis thaliana NP_851192 Arabidopsis thaliana CMT321C Cyanidioschyzon merolae strain 10D 145043 Chlamydomonas reinhardtii NP_113185 Guillardia theta ACO63602 Micromonas sp. RCC299 NP_001053955 Oryza sativa Japonica Group NP_001055949 Oryza sativa Japonica Group NP_001059843 Oryza sativa Japonica Group 1700010190 Ostreococcus tauri estExt_Genewise1.C_230133 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3100010 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_40107 Physcomitrella patens subsp. patens 27777.m000276 Ricinus communis 28166.m001084 Ricinus communis thaps1_ua_kg.chr_2000111 Thalassiosira pseudonana CCMP1335 XP_002949286 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF004499 6.3E-73 1 112 IPR005874 Eukaryotic translation initiation factor SUI1 SUPERFAMILY SSF55159 1.8E-33 4 112 IPR001950 Translation initiation factor SUI1 PANTHER PTHR10388 5.6E-64 5 112 No hit NA TIGRFAM TIGR01160 4.9E-51 5 112 IPR005874 Eukaryotic translation initiation factor SUI1 Pfam PF01253 3.4E-26 25 104 IPR001950 Translation initiation factor SUI1 ProSiteProfiles PS50296 23.2 30 100 IPR001950 Translation initiation factor SUI1