Leaf Senescence DataBase

Basic information

Locus name

AT5G21040

Alias

FBX2

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

F-BOX PROTEIN 2 (FBX2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G43770.1); Has 17113 Blast hits to 10441 proteins in 435 species: Archae - 22; Bacteria - 2881; Metazoa - 6804; Fungi - 3732; Plants - 1425; Viruses - 0; Other Eukaryotes - 2249 (source: NCBI BLink).

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

protein binding

Sequence

Ortholog Group

Ortholog Groups: OG5_170895

Accession	Taxon
NP_568408 ( AT5G21040 )	Arabidopsis thaliana
NP_001053901	Oryza sativa Japonica Group
estExt_gwp_gw1.C_1460070	Physcomitrella patens subsp. patens
29942.m000736	Ricinus communis
XP_002956966	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProSiteProfiles	PS50181	11.5	65	111	IPR001810	F-box domain, cyclin-like
SUPERFAMILY	SSF81383	1.1E-13	66	142	IPR001810	F-box domain, cyclin-like
Pfam	PF12937	6.2E-6	68	113	No hit	NA
SMART	SM00256	2.9E-4	71	111	IPR001810	F-box domain, cyclin-like
SMART	SM00320	0.0	151	190	IPR001680	WD40 repeat
SUPERFAMILY	SSF50978	2.5E-51	153	471	IPR017986	WD40-repeat-containing domain
PANTHER	PTHR22844	7.4E-62	155	503	No hit	NA
Pfam	PF00400	3.9E-4	156	190	IPR001680	WD40 repeat
ProSiteProfiles	PS50082	12.8	158	199	IPR001680	WD40 repeat
ProSiteProfiles	PS50294	24.1	158	477	IPR017986	WD40-repeat-containing domain
PRINTS	PR00320	8.4E-5	177	191	IPR020472	G-protein beta WD-40 repeat
ProSitePatterns	PS00678	NA	177	191	IPR019775	WD40 repeat, conserved site
SMART	SM00320	77.0	199	230	IPR001680	WD40 repeat
SMART	SM00320	1.4E-4	246	283	IPR001680	WD40 repeat
Pfam	PF00400	1.0E-5	253	283	IPR001680	WD40 repeat
ProSiteProfiles	PS50082	11.9	253	292	IPR001680	WD40 repeat
PRINTS	PR00320	8.4E-5	270	284	IPR020472	G-protein beta WD-40 repeat
SMART	SM00320	0.0	286	321	IPR001680	WD40 repeat
SMART	SM00320	0.0	324	364	IPR001680	WD40 repeat
ProSiteProfiles	PS50082	8.5	332	373	IPR001680	WD40 repeat
Pfam	PF00400	8.9E-4	333	363	IPR001680	WD40 repeat
SMART	SM00320	0.2	373	410	IPR001680	WD40 repeat
Pfam	PF00400	0.0	383	406	IPR001680	WD40 repeat
SMART	SM00320	1.0	431	468	IPR001680	WD40 repeat
PRINTS	PR00320	8.4E-5	455	469	IPR020472	G-protein beta WD-40 repeat