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Locus name | AT5G18100 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Redox regulation:SOD |
Effect for Senescence | Unclear |
Gene Description | Cu/Zn superoxide dismutase-like protein |
Evidence | Molecular evidence: SSH and Northern [Ref 1] |
References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
Gene Ontology | |
Sequence | AT5G18100.1 | Genomic | mRNA | CDS | Protein AT5G18100.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: AT5G18100.1 miRNA: ath-miR167a miRNA: ath-miR167a mfe: -26.7 kcal/mol p-value: 0.007523
position: 281 target 5' G C A G G 3' AG GUCAUGCUGGCG UUU G UC UAGUACGACCGU GAA U miRNA 3' A C G 5'
target: AT5G18100.1 miRNA: ath-miR167b miRNA: ath-miR167b mfe: -26.7 kcal/mol p-value: 0.006715
position: 281 target 5' G C A G G 3' AG GUCAUGCUGGCG UUU G UC UAGUACGACCGU GAA U miRNA 3' A C G 5'
target: AT5G18100.1 miRNA: ath-miR167c miRNA: ath-miR167c mfe: -28.5 kcal/mol p-value: 0.003271
position: 280 target 5' A C A G 3' GAG GUCAUGCUGGCG UUUG UUC UAGUACGACCGU GAAU miRNA 3' G C 5'
target: AT5G18100.1 miRNA: ath-miR172a miRNA: ath-miR172a mfe: -25.1 kcal/mol p-value: 0.007853
position: 483 target 5' G C A 3' AUGUGGUAUCAUCG GA UUC UACGUCGUAGUAGU CU AAG miRNA 3' U A 5'
target: AT5G18100.1 miRNA: ath-miR172b miRNA: ath-miR172b mfe: -25.1 kcal/mol p-value: 0.008005
position: 483 target 5' G C A 3' AUGUGGUAUCAUCG GA UUC UACGUCGUAGUAGU CU AAG miRNA 3' U A 5'
target: AT5G18100.1 miRNA: ath-miR172c miRNA: ath-miR172c mfe: -24.7 kcal/mol p-value: 0.009834
position: 484 target 5' A C A 3' UGUGGUAUCAUCG GA UUC ACGUCGUAGUAGU CU AAG miRNA 3' G U A 5'
target: AT5G18100.1 miRNA: ath-miR172d miRNA: ath-miR172d mfe: -24.7 kcal/mol p-value: 0.010700
position: 484 target 5' A C A 3' UGUGGUAUCAUCG GA UUC ACGUCGUAGUAGU CU AAG miRNA 3' G U A 5'
target: AT5G18100.1 miRNA: ath-miR172e miRNA: ath-miR172e mfe: -25.4 kcal/mol p-value: 0.006838
position: 483 target 5' G C A 3' AUGUGGUAUCAUCG GA UUC UACGUCGUAGUAGU CU AGG miRNA 3' U A 5'
target: AT5G18100.2 miRNA: ath-miR167a miRNA: ath-miR167a mfe: -26.7 kcal/mol p-value: 0.004369
position: 281 target 5' G C A G G 3' AG GUCAUGCUGGCG UUU G UC UAGUACGACCGU GAA U miRNA 3' A C G 5'
target: AT5G18100.2 miRNA: ath-miR167b miRNA: ath-miR167b mfe: -26.7 kcal/mol p-value: 0.003921
position: 281 target 5' G C A G G 3' AG GUCAUGCUGGCG UUU G UC UAGUACGACCGU GAA U miRNA 3' A C G 5'
target: AT5G18100.2 miRNA: ath-miR167c miRNA: ath-miR167c mfe: -28.5 kcal/mol p-value: 0.001878
position: 280 target 5' A C A G 3' GAG GUCAUGCUGGCG UUUG UUC UAGUACGACCGU GAAU miRNA 3' G C 5'
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Ortholog Group | |
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Ortholog Groups: OG5_127584 | |
Cross Link | |
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Localization 1 | Localization | other cytoplasmic components | Evidence | Localization with GFP-fusion protein (GFP:cDNA) | Pubmed ID | 10737809 |
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Localization 2 | Localization | cytosol | Evidence | SUBAcon | Pubmed ID | 23180787 |
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Localization 3 | Localization | peroxisome | Evidence | SUBAcon | Pubmed ID | 23180787 |
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