Basic information
Locus name	AT2G29350
Alias	SAG13
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	unclear
Gene Description	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase
Evidence	Molecular evidence:Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References	1: Libault M, Wan J, Czechowski T, Udvardi M, Stacey G Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact. 2007 Aug;20(8):900-11 2: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process metabolic process molecular function oxidoreductase activity
Sequence	AT2G29350.1 | Genomic | mRNA | CDS | Protein AT2G29350.2 | Genomic | mRNA | CDS | Protein AT2G29350.3 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_139178	Accession Taxon NP_001031442 Arabidopsis thaliana NP_001118408 Arabidopsis thaliana NP_180479 Arabidopsis thaliana NP_180490 Arabidopsis thaliana NP_180496 ( AT2G29350 ) Arabidopsis thaliana NP_180497 Arabidopsis thaliana NP_850132 Arabidopsis thaliana NP_973558 Arabidopsis thaliana 29751.m001871 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24310 3.9E-183 1 269 No hit NA SUPERFAMILY SSF51735 3.2E-76 17 260 No hit NA Pfam PF00106 1.2E-37 19 185 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 2.6E-37 19 36 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00080 6.7E-7 94 105 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 2.6E-37 94 105 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 2.6E-37 141 157 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00080 6.7E-7 147 155 IPR002198 Short-chain dehydrogenase/reductase SDR ProSitePatterns PS00061 NA 154 182 IPR020904 Short-chain dehydrogenase/reductase, conserved site PRINTS PR00080 6.7E-7 167 186 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 2.6E-37 167 186 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 2.6E-37 188 205 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 2.6E-37 222 242 IPR002347 Glucose/ribitol dehydrogenase