Basic information
Locus name	AT3G63010
Alias	GID1B
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway
Effect for Senescence	unclear
Gene Description	GA INSENSITIVE DWARF1B (GID1B); FUNCTIONS IN: hydrolase activity; INVOLVED IN: raffinose family oligosaccharide biosynthetic process, floral organ morphogenesis, positive regulation of gibberellic acid mediated signaling, response to gibberellin stimulus, gibberellin-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: GID1C (GA INSENSITIVE DWARF1C); hydrolase (TAIR:AT5G27320.1); Has 5663 Blast hits to 5652 proteins in 870 species: Archae - 47; Bacteria - 2958; Metazoa - 493; Fungi - 441; Plants - 650; Viruses - 5; Other Eukaryotes - 1069 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process metabolic process molecular function hydrolase activity
Sequence	AT3G63010.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_212552	Accession Taxon NP_191860 ( AT3G63010 ) Arabidopsis thaliana 29703.m001506 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23024 5.4E-128 12 353 No hit NA SUPERFAMILY SSF53474 5.6E-51 53 341 No hit NA Pfam PF07859 8.9E-60 109 322 IPR013094 Alpha/beta hydrolase fold-3 ProSitePatterns PS01173 NA 109 125 IPR002168 Lipase, GDXG, active site ProSitePatterns PS01174 NA 185 197 IPR002168 Lipase, GDXG, active site
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787