Leaf Senescence DataBase

Basic information

Locus name

AT4G34680

Alias

GATA-3

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation

Effect for Senescence

unclear

Gene Description

GATA transcription factor 3, putative (GATA-3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G60530.1); Has 846 Blast hits to 825 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 352; Plants - 439; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	positive regulation of transcription, DNA-dependent regulation of transcription, DNA-dependent
cellular component	nucleus
molecular function	DNA binding sequence-specific DNA binding transcription factor activity sequence-specific DNA binding zinc ion binding

Sequence

Ortholog Group

Ortholog Groups: OG5_189069

Accession	Taxon
NP_001031789 ( AT4G34680 )	Arabidopsis thaliana
NP_195194	Arabidopsis thaliana
NP_001048947	Oryza sativa Japonica Group

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	2.4E-153	1	269	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	3.7E-14	176	226	IPR000679	Zinc finger, GATA-type
PANTHER	PTHR10071	8.8E-41	179	252	No hit	NA
SUPERFAMILY	SSF57716	8.6E-15	179	239	No hit	NA
ProSiteProfiles	PS50114	12.0	180	212	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.4E-15	182	215	IPR000679	Zinc finger, GATA-type
ProSitePatterns	PS00344	NA	182	207	IPR000679	Zinc finger, GATA-type

Subcellular Localization

Localization 1
	Localization	nucleus
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809

Localization 2
	Localization	nucleus
	Evidence	Localization with GFP-ORF fusion protein (GFP:cDNA)
	Pubmed ID	15610358

Localization 3
	Localization	nucleus
	Evidence	SUBAcon
	Pubmed ID	23180787