Basic information
Locus name	AT4G14630
Alias	GLP9
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	GERMIN-LIKE PROTEIN 9 (GLP9); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to salt stress; LOCATED IN: extracellular region, plasma membrane, plant-type vacuole; EXPRESSED IN: stem, sepal, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: manganese ion binding / nutrient reservoir (TAIR:AT5G38940.1); Has 868 Blast hits to 865 proteins in 80 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 30; Plants - 827; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component apoplast molecular function manganese ion binding
Sequence	AT4G14630.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_134852	Accession Taxon NP_193199 ( AT4G14630 ) Arabidopsis thaliana NP_198707 Arabidopsis thaliana NP_198709 Arabidopsis thaliana NP_198710 Arabidopsis thaliana NP_198712 Arabidopsis thaliana NP_001061155 Oryza sativa Japonica Group NP_001061156 Oryza sativa Japonica Group NP_001061157 Oryza sativa Japonica Group NP_001061158 Oryza sativa Japonica Group NP_001061159 Oryza sativa Japonica Group NP_001061160 Oryza sativa Japonica Group NP_001061161 Oryza sativa Japonica Group NP_001061162 Oryza sativa Japonica Group NP_001061163 Oryza sativa Japonica Group NP_001061164 Oryza sativa Japonica Group NP_001061303 Oryza sativa Japonica Group NP_001066188 Oryza sativa Japonica Group NP_001066189 Oryza sativa Japonica Group NP_001066190 Oryza sativa Japonica Group NP_001066191 Oryza sativa Japonica Group 28830.m000226 Ricinus communis 28830.m000227 Ricinus communis 29680.m001752 Ricinus communis 29825.m000316 Ricinus communis 29825.m000317 Ricinus communis 29950.m001186 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31238 2.8E-132 1 222 No hit NA SUPERFAMILY SSF51182 3.9E-47 26 221 IPR011051 RmlC-like cupin domain SMART SM00835 1.5E-32 65 216 IPR006045 Cupin 1 Pfam PF00190 3.2E-31 66 215 IPR006045 Cupin 1 ProSitePatterns PS00725 NA 108 121 IPR019780 Germin, manganese binding site PRINTS PR00325 7.4E-27 113 133 IPR001929 Germin PRINTS PR00325 7.4E-27 146 166 IPR001929 Germin PRINTS PR00325 7.4E-27 179 194 IPR001929 Germin
Subcellular Localization
Localization	extracellular,plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787