Basic information
Locus name	AT3G56060
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 8246 Blast hits to 8129 proteins in 681 species: Archae - 2; Bacteria - 2348; Metazoa - 724; Fungi - 1039; Plants - 126; Viruses - 15; Other Eukaryotes - 3992 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process alcohol metabolic process oxidation-reduction process molecular function choline dehydrogenase activity flavin adenine dinucleotide binding oxidoreductase activity, acting on CH-OH group of donors
Pathway	KEGG map00260 (EC 1.1.99.1)
Sequence	AT3G56060.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G56060.1  miRNA: ath-miR2938 miRNA: ath-miR2938 mfe: -32.8 kcal/mol  p-value: 0.001458  position: 1258  target 5' A       G             A  3'             UGG ACC CUCUCGAGAGGUC                 ACC UGG GAGAGUUUUCUAG      miRNA  3' G   U                    5'
Ortholog Group
Ortholog Groups: OG5_126713	Accession Taxon NP_001119417 Arabidopsis thaliana NP_172871 Arabidopsis thaliana NP_177448 Arabidopsis thaliana NP_200006 Arabidopsis thaliana NP_200008 Arabidopsis thaliana NP_563939 Arabidopsis thaliana NP_567032 ( AT3G56060 ) Arabidopsis thaliana CMP087C Cyanidioschyzon merolae strain 10D 140509 Chlamydomonas reinhardtii NP_001047732 Oryza sativa Japonica Group NP_001053612 Oryza sativa Japonica Group NP_001065107 Oryza sativa Japonica Group e_gw1.78.130.1 Physcomitrella patens subsp. patens 29813.m001500 Ricinus communis 30147.m014326 Ricinus communis 30190.m011111 Ricinus communis 38468.m000014 Ricinus communis estExt_gwp_gw1.C_chr_80326 Thalassiosira pseudonana CCMP1335 XP_002948047 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11552 4.2E-275 1 571 No hit NA PIRSF PIRSF000137 1.8E-92 2 571 IPR012132 Glucose-methanol-choline oxidoreductase SUPERFAMILY SSF51905 4.5E-49 44 309 No hit NA Pfam PF00732 1.4E-31 46 322 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal ProSitePatterns PS00623 NA 118 141 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal ProSitePatterns PS00624 NA 280 294 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal SUPERFAMILY SSF54373 8.3E-35 318 513 No hit NA Pfam PF05199 2.7E-27 412 557 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal SUPERFAMILY SSF51905 4.5E-49 509 566 No hit NA