Basic information   
Locus name AT5G41080
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene Descriptionglycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (TAIR:AT3G02040.1); Has 1314 Blast hits to 1286 proteins in 350 species: Archae - 22; Bacteria - 625; Metazoa - 237; Fungi - 103; Plants - 54; Viruses - 2; Other Eukaryotes - 271 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
biological process
molecular function
SequenceAT5G41080.1 | Genomic | mRNA | CDS | Protein
AT5G41080.2 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_128954
AccessionTaxon
NP_198924 ( AT5G41080 ) Arabidopsis thaliana
NP_199144Arabidopsis thaliana
NP_566159Arabidopsis thaliana
NP_974865Arabidopsis thaliana
CMR112CCyanidioschyzon merolae strain 10D
102445Chlamydomonas reinhardtii
206119Chlamydomonas reinhardtii
ACO62504Micromonas sp. RCC299
NP_001046948Oryza sativa Japonica Group
NP_001052651Oryza sativa Japonica Group
NP_001062357Oryza sativa Japonica Group
e_gw1.107.86.1Physcomitrella patens subsp. patens
e_gw1.288.11.1Physcomitrella patens subsp. patens
e_gw1.70.77.1Physcomitrella patens subsp. patens
gw1.227.40.1Physcomitrella patens subsp. patens
29929.m004597Ricinus communis
30131.m007020Ricinus communis
XP_002950421Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SUPERFAMILYSSF516953.9E-4038127IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
PANTHERPTHR229584.1E-13340372No hitNA
PfamPF030091.9E-5343320IPR004129Glycerophosphoryl diester phosphodiesterase
SUPERFAMILYSSF516953.9E-40156321IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain