Basic information
Locus name	AT4G08160
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G58370.1); Has 1417 Blast hits to 1344 proteins in 275 species: Archae - 0; Bacteria - 707; Metazoa - 29; Fungi - 275; Plants - 211; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT4G08160.1 | Genomic | mRNA | CDS | Protein AT4G08160.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_134270	Accession Taxon NP_001031593 Arabidopsis thaliana NP_172476 Arabidopsis thaliana NP_176133 Arabidopsis thaliana NP_192556 ( AT4G08160 ) Arabidopsis thaliana NP_001041946 Oryza sativa Japonica Group NP_001041947 Oryza sativa Japonica Group NP_001050876 Oryza sativa Japonica Group NP_001055187 Oryza sativa Japonica Group NP_001059561 Oryza sativa Japonica Group estExt_Genewise1.C_1210062 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_299000030 Physcomitrella patens subsp. patens 30170.m013644 Ricinus communis 30170.m013645 Ricinus communis estExt_thaps1_ua_kg.C_chr_60011 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31490 3.0E-278 1 749 No hit NA SUPERFAMILY SSF49785 1.2E-36 25 179 IPR008979 Galactose-binding domain-like Pfam PF02018 2.7E-18 26 163 IPR003305 Carbohydrate-binding, CenC-like SUPERFAMILY SSF49785 5.5E-30 195 362 IPR008979 Galactose-binding domain-like Pfam PF02018 1.5E-18 197 344 IPR003305 Carbohydrate-binding, CenC-like SUPERFAMILY SSF51445 2.1E-87 401 699 IPR017853 Glycoside hydrolase, superfamily Pfam PF00331 5.6E-60 407 690 IPR001000 Glycoside hydrolase, family 10 SMART SM00633 1.0E-8 443 693 IPR001000 Glycoside hydrolase, family 10