Basic information
Locus name	AT5G59490
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G02230.2); Has 1759 Blast hits to 1758 proteins in 297 species: Archae - 17; Bacteria - 410; Metazoa - 0; Fungi - 91; Plants - 109; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function hydrolase activity
Sequence	AT5G59490.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_130972	Accession Taxon NP_191763 Arabidopsis thaliana NP_200757 ( AT5G59490 ) Arabidopsis thaliana NP_565738 Arabidopsis thaliana 150728 Chlamydomonas reinhardtii ACO62000 Micromonas sp. RCC299 ACO64761 Micromonas sp. RCC299 NP_001045544 Oryza sativa Japonica Group NP_001049700 Oryza sativa Japonica Group NP_001050999 Oryza sativa Japonica Group NP_001060381 Oryza sativa Japonica Group 1800010151 Ostreococcus tauri e_gw1.16.00.218.1 Ostreococcus tauri e_gw1.164.28.1 Physcomitrella patens subsp. patens 29726.m003893 Ricinus communis 30076.m004529 Ricinus communis estExt_thaps1_ua_kg.C_chr_20101 Thalassiosira pseudonana CCMP1335 XP_002953393 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR18901 4.6E-27 7 264 No hit NA SUPERFAMILY SSF56784 2.1E-26 11 232 IPR023214 HAD-like domain TIGRFAM TIGR01993 2.1E-68 12 212 IPR010237 Pyrimidine 5-nucleotidase Pfam PF13419 4.9E-20 14 212 IPR023214 HAD-like domain TIGRFAM TIGR01509 5.4E-10 159 212 IPR006402 HAD-superfamily hydrolase, subfamily IA, variant 3