Basic information
Locus name	AT4G30440
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Cell wall
Effect for Senescence	Unclear
Gene Description	Nucleotide sugar epimerase. Upregulated in senescent leaves.
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	biological process carbohydrate metabolic process molecular function racemase and epimerase activity, acting on carbohydrates and derivatives
Sequence	AT4G30440.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G30440.1  miRNA: ath-miR161 miRNA: ath-miR161 mfe: -31.2 kcal/mol  p-value: 0.001304  position:  685  target 5' U                    C 3'             UUUCGAUGUGGUUGCUUUCA              GGGGCUACAUCAGUGAAAGU   miRNA  3' U                      5'
Ortholog Group
Ortholog Groups: OG5_130678	Accession Taxon NP_171702 Arabidopsis thaliana NP_182056 Arabidopsis thaliana NP_189024 Arabidopsis thaliana NP_191922 Arabidopsis thaliana NP_192962 Arabidopsis thaliana NP_194773 ( AT4G30440 ) Arabidopsis thaliana CMR075C Cyanidioschyzon merolae strain 10D 151368 Chlamydomonas reinhardtii ACO65402 Micromonas sp. RCC299 NP_001048359 Oryza sativa Japonica Group NP_001049561 Oryza sativa Japonica Group NP_001062295 Oryza sativa Japonica Group NP_001063595 Oryza sativa Japonica Group e_gw1.02.00.252.1 Ostreococcus tauri estExt_fgenesh1_pg.C_1140049 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_520060 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_910081 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_2190004 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_380123 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_11000026 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_2000042 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_298000007 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_46000012 Physcomitrella patens subsp. patens 29629.m001442 Ricinus communis 29783.m000322 Ricinus communis 30190.m011013 Ricinus communis estExt_Genewise1.C_chr_120162 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_10000209 Thalassiosira pseudonana CCMP1335 XP_002945754 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10366 1.9E-222 83 426 No hit NA SUPERFAMILY SSF51735 4.8E-81 86 420 No hit NA Pfam PF01370 3.3E-48 90 322 IPR001509 NAD-dependent epimerase/dehydratase PRINTS PR01713 2.9E-28 116 132 IPR008089 Nucleotide sugar epimerase PRINTS PR01713 2.9E-28 306 321 IPR008089 Nucleotide sugar epimerase PRINTS PR01713 2.9E-28 341 356 IPR008089 Nucleotide sugar epimerase PRINTS PR01713 2.9E-28 381 398 IPR008089 Nucleotide sugar epimerase
Subcellular Localization
Localization	golgi
Evidence	SUBAcon
Pubmed ID	23180787