Basic information
Locus name	AT5G02560
Alias	HTA12
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	HTA12; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA6; DNA binding (TAIR:AT5G59870.1); Has 3287 Blast hits to 3287 proteins in 312 species: Archae - 0; Bacteria - 0; Metazoa - 2216; Fungi - 240; Plants - 451; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process nucleosome assembly cellular component nucleosome molecular function DNA binding
Sequence	AT5G02560.1 | Genomic | mRNA | CDS | Protein AT5G02560.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126570	Accession Taxon NP_172363 Arabidopsis thaliana NP_175517 Arabidopsis thaliana NP_175868 Arabidopsis thaliana NP_188703 Arabidopsis thaliana NP_194453 Arabidopsis thaliana NP_195876 ( AT5G02560 ) Arabidopsis thaliana NP_200275 Arabidopsis thaliana NP_200795 Arabidopsis thaliana CMN170C Cyanidioschyzon merolae strain 10D CMN174C Cyanidioschyzon merolae strain 10D 100147 Chlamydomonas reinhardtii 100223 Chlamydomonas reinhardtii 107113 Chlamydomonas reinhardtii 112398 Chlamydomonas reinhardtii 112753 Chlamydomonas reinhardtii 115469 Chlamydomonas reinhardtii 117095 Chlamydomonas reinhardtii 167193 Chlamydomonas reinhardtii 167223 Chlamydomonas reinhardtii 169653 Chlamydomonas reinhardtii 187 Chlamydomonas reinhardtii 246 Chlamydomonas reinhardtii 248 Chlamydomonas reinhardtii 333 Chlamydomonas reinhardtii 645 Chlamydomonas reinhardtii 647 Chlamydomonas reinhardtii 655 Chlamydomonas reinhardtii 702 Chlamydomonas reinhardtii 793 Chlamydomonas reinhardtii 800 Chlamydomonas reinhardtii 82 Chlamydomonas reinhardtii 834 Chlamydomonas reinhardtii 872 Chlamydomonas reinhardtii 97737 Chlamydomonas reinhardtii 97953 Chlamydomonas reinhardtii 98017 Chlamydomonas reinhardtii 98019 Chlamydomonas reinhardtii 99930 Chlamydomonas reinhardtii ACO62660 Micromonas sp. RCC299 ACO64888 Micromonas sp. RCC299 ACO67839 Micromonas sp. RCC299 NP_001043136 Oryza sativa Japonica Group NP_001049731 Oryza sativa Japonica Group NP_001051106 Oryza sativa Japonica Group NP_001054458 Oryza sativa Japonica Group NP_001055762 Oryza sativa Japonica Group NP_001059914 Oryza sativa Japonica Group NP_001059915 Oryza sativa Japonica Group NP_001061844 Oryza sativa Japonica Group NP_001066688 Oryza sativa Japonica Group NP_001066920 Oryza sativa Japonica Group e_gw1.08.00.377.1 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_12.00010066 Ostreococcus tauri fgenesh1_pm.C_Chr_16.0001000023 Ostreococcus tauri e_gw1.117.80.1 Physcomitrella patens subsp. patens e_gw1.145.84.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_470112 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_720006 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_550059 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_188000005 Physcomitrella patens subsp. patens gw1.452.22.1 Physcomitrella patens subsp. patens 29154.m000210 Ricinus communis 29154.m000212 Ricinus communis 29647.m002053 Ricinus communis 29647.m002054 Ricinus communis 29842.m003686 Ricinus communis 30128.m008694 Ricinus communis 30131.m006936 Ricinus communis e_gw1.14.276.1 Thalassiosira pseudonana CCMP1335 e_gw1.3.749.1 Thalassiosira pseudonana CCMP1335 e_gw1.7.500.1 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_7000331 Thalassiosira pseudonana CCMP1335 gw1.5.537.1 Thalassiosira pseudonana CCMP1335 XP_002945852 Volvox carteri f. nagariensis XP_002946107 Volvox carteri f. nagariensis XP_002947549 Volvox carteri f. nagariensis XP_002947993 Volvox carteri f. nagariensis XP_002948138 Volvox carteri f. nagariensis XP_002948271 Volvox carteri f. nagariensis XP_002949393 Volvox carteri f. nagariensis XP_002951795 Volvox carteri f. nagariensis XP_002955419 Volvox carteri f. nagariensis XP_002956799 Volvox carteri f. nagariensis XP_002956803 Volvox carteri f. nagariensis XP_002956850 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00414 8.3E-78 12 132 IPR002119 Histone H2A PANTHER PTHR23430 1.1E-83 17 140 No hit NA PRINTS PR00620 1.3E-50 23 45 IPR002119 Histone H2A SUPERFAMILY SSF47113 2.1E-41 26 129 IPR009072 Histone-fold Pfam PF00125 9.8E-23 27 100 IPR007125 Histone core PRINTS PR00620 1.3E-50 52 67 IPR002119 Histone H2A PRINTS PR00620 1.3E-50 67 80 IPR002119 Histone H2A PRINTS PR00620 1.3E-50 81 95 IPR002119 Histone H2A PRINTS PR00620 1.3E-50 109 127 IPR002119 Histone H2A
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787